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The map label for this gene is rpl3p

Identifier: 159040903

GI number: 159040903

Start: 354021

End: 355064

Strand: Reverse

Name: rpl3p

Synonym: Cmaq_0317

Alternate gene names: 159040903

Gene position: 355064-354021 (Counterclockwise)

Preceding gene: 159040914

Following gene: 159040902

Centisome position: 17.09

GC content: 47.32

Gene sequence:

>1044_bases
GTGGGGTTGAAGATTCATAGGCCTAGGAGAGGATCCATGGCCTACTACCCTAGGAAGAGGGCCAGTGACATAGTGCCTAG
AATACGTAATTGGCCTGTAATTGACTTAGGTAAACCAACGCTCCTTGGATTCGTAGGATATAAGGCAGGCATGGTTCACG
TTACCGTGGTGGATGATAGGAAGACGAGTCCATTCTTCGGTAAGGAACTCGTTAAGGCCGTTACAGTGGTGGAGACTCCA
CCACTTTACGTGGTTGGTTTAAGGGCTTACGCAATTAATCCCCTTAAGGCTGAATTAGTAAGTGTTGGTGAGGCTTGGGT
TAACATCCCCAATGAGGTGAGGAAGTATATTGCGAGGAGGATACCTACACTACCTGAGAAGTTTGATACTGATAAGGCTC
TTGCAGACCTACAGGGTTTACTCGACTCAGTGAGTTACATTAAGGTTATTGCAATGACCCAGCCCTACAAGGCTGGTGTG
GGTAAGAAGACCCCTGAGGTTCTTGAAATACCAGTGGGTGGTGTACCAACTATTGATGAGCAGTTTAAGTATGCCTCAGG
TTTATTGGGTAAGGAGGTTAAGCCCACTGACGTCTTCAAACCCGGTCAACTGGTGGATGTTATCGGGGTCACTAAGGGTA
AGGGGACTCAGGGCGTGATTAAGAGGTTTGGTGTTAAGGAGTTGCCTAGGTGGCATAAGCATAGGAAGGGTTCTAGGAGG
ACTGGGACCGTTGGACCTAAGCCCGCTGTAATGTATACTCAACCAAGGATGGGGCAGATGGGGTTCCATAGGCGCACTGA
GTATAATAAGAGGATACTTAAAATAAGTGATAATGGTTCTGAAATAACACCTAAGGGTGGGTTTAAGCACTACGGCATAG
TAAGGAGTGGTTACATGCTTATTGAAGGTTCAACACCAGGTGTGGTTAAGAGGCTTATAGCCTTCAGGTACCCCATTAGG
CCGCCGTTTAACTATGATCTTAAGCAGGTTCAGGCACCAAGCGTGACTTGGGTAAGCGTAATGGGTGTTAGTGGGGTGAG
TTGA

Upstream 100 bases:

>100_bases
TAAACCCTGAGCCTTAGGAGGGGAACTTAACTTACACTGGTCATCATCTATAAAGCTTAAAAAGGCCTCATTCATTAACC
CACTGCTAAGGTGTCTTATA

Downstream 100 bases:

>100_bases
AGTGAGTATTGACTTATCTCCATTACTTAAGAATAAGTATGAGGTTCCAGCTAAGGCTAAGTTACTGAACCTTAACGGTG
AGGCGGTTGGTGAGGTTGAC

Product: 50S ribosomal protein L3P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MGLKIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPTLLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETP
PLYVVGLRAYAINPLKAELVSVGEAWVNIPNEVRKYIARRIPTLPEKFDTDKALADLQGLLDSVSYIKVIAMTQPYKAGV
GKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRR
TGTVGPKPAVMYTQPRMGQMGFHRRTEYNKRILKISDNGSEITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFRYPIR
PPFNYDLKQVQAPSVTWVSVMGVSGVS

Sequences:

>Translated_347_residues
MGLKIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPTLLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETP
PLYVVGLRAYAINPLKAELVSVGEAWVNIPNEVRKYIARRIPTLPEKFDTDKALADLQGLLDSVSYIKVIAMTQPYKAGV
GKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRR
TGTVGPKPAVMYTQPRMGQMGFHRRTEYNKRILKISDNGSEITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFRYPIR
PPFNYDLKQVQAPSVTWVSVMGVSGVS
>Mature_346_residues
GLKIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPTLLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPP
LYVVGLRAYAINPLKAELVSVGEAWVNIPNEVRKYIARRIPTLPEKFDTDKALADLQGLLDSVSYIKVIAMTQPYKAGVG
KKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRT
GTVGPKPAVMYTQPRMGQMGFHRRTEYNKRILKISDNGSEITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFRYPIRP
PFNYDLKQVQAPSVTWVSVMGVSGVS

Specific function: One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit

COG id: COG0087

COG function: function code J; Ribosomal protein L3

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L3P family

Homologues:

Organism=Homo sapiens, GI4506649, Length=350, Percent_Identity=34, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI76496472, Length=340, Percent_Identity=33.5294117647059, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI4826988, Length=349, Percent_Identity=32.9512893982808, Blast_Score=146, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI71984538, Length=348, Percent_Identity=35.3448275862069, Blast_Score=164, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI71984544, Length=336, Percent_Identity=32.7380952380952, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI71984550, Length=204, Percent_Identity=37.7450980392157, Blast_Score=109, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6324637, Length=365, Percent_Identity=32.8767123287671, Blast_Score=148, Evalue=1e-36,
Organism=Drosophila melanogaster, GI17737907, Length=376, Percent_Identity=34.5744680851064, Blast_Score=176, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24645877, Length=367, Percent_Identity=34.0599455040872, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI24645879, Length=367, Percent_Identity=34.0599455040872, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI24645875, Length=158, Percent_Identity=36.7088607594937, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24645881, Length=114, Percent_Identity=36.8421052631579, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL3_CALMQ (A8MB75)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001540155.1
- ProteinModelPortal:   A8MB75
- SMR:   A8MB75
- GeneID:   5710162
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_0317
- HOGENOM:   HBG297464
- OMA:   WGTKKLP
- ProtClustDB:   PRK04231
- BioCyc:   CMAQ397948:CMAQ_0317-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01325_A
- InterPro:   IPR000597
- InterPro:   IPR019928
- InterPro:   IPR019926
- InterPro:   IPR009000
- TIGRFAMs:   TIGR03626

Pfam domain/function: PF00297 Ribosomal_L3; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 38536; Mature: 38405

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS00474 RIBOSOMAL_L3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPTLLGFVGYKAGMVHVTVVDDR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHEEEECCCCCEEEEEEECCC
KTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWVNIPNEVRKYIARR
CCCCHHHHHHHHHHHHCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
IPTLPEKFDTDKALADLQGLLDSVSYIKVIAMTQPYKAGVGKKTPEVLEIPVGGVPTIDE
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHCCCCCCCCCEEEECCCCCCCHHH
QFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRR
HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHCCCCCC
TGTVGPKPAVMYTQPRMGQMGFHRRTEYNKRILKISDNGSEITPKGGFKHYGIVRSGYML
CCCCCCCCEEEEECCCCCCCCCHHHHCCCCEEEEEECCCCEECCCCCCCEECEEECCEEE
IEGSTPGVVKRLIAFRYPIRPPFNYDLKQVQAPSVTWVSVMGVSGVS
EECCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
GLKIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPTLLGFVGYKAGMVHVTVVDDR
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHEEEECCCCCEEEEEEECCC
KTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWVNIPNEVRKYIARR
CCCCHHHHHHHHHHHHCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
IPTLPEKFDTDKALADLQGLLDSVSYIKVIAMTQPYKAGVGKKTPEVLEIPVGGVPTIDE
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHCCCCCCCCCEEEECCCCCCCHHH
QFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRR
HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHCCCCCC
TGTVGPKPAVMYTQPRMGQMGFHRRTEYNKRILKISDNGSEITPKGGFKHYGIVRSGYML
CCCCCCCCEEEEECCCCCCCCCHHHHCCCCEEEEEECCCCEECCCCCCCEECEEECCEEE
IEGSTPGVVKRLIAFRYPIRPPFNYDLKQVQAPSVTWVSVMGVSGVS
EECCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA