| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159040729
Identifier: 159040729
GI number: 159040729
Start: 166275
End: 167270
Strand: Reverse
Name: 159040729
Synonym: Cmaq_0141
Alternate gene names: NA
Gene position: 167270-166275 (Counterclockwise)
Preceding gene: 159040731
Following gene: 159040728
Centisome position: 8.05
GC content: 40.86
Gene sequence:
>996_bases GTGTCATTACTTAACGTTGAGGAGCTTGAGAAGAAGATAGAAGAGTTGAACGTTAAGTTGAATGATGTTAATGGTGAGTT GGATAAGACTTATAAGGAATTGAATGAACTTAAAGGCAAGTTAAATGAGAAGAGAAGCCAATTAACAGCCGTAATAAACC AATTAAACAGTAAGAGGGCTGAGTTAAGTGAATTAAAGAATAAGATTAATGAATTAATCAGTAAAAGGAATAATCTCATT GAGTATCTTAAGAAGAATAAGGCTGAGAAGGATGAGGTGAGTAAGAGGATTATTCAATTAAGGGATAGGGTTAGGAATCT TAGGGAGCTTTTAAAGGAGCTTGAGGCATCAGGTGGTAGGGTTCAGGATAAGGATAAGTTAAGGGTCTTGATTGAGAGGC TTGAGTTTGAGCATGATACATCACCTTCAGATTTAAAGAAGGAGATGGAGTTCTATAAAACCATTACAGAGCTTGAGAAG AACCTTGAGAAGGCTGAGACACTGGATGAGCTTAGGAATCATATAGCCAACACTGTTAAGGAAATTGAGGAATTAAGTAG AAGACGTACTGAATTAGTCAACAGCCTCAAGTCAACCTACGAGGGTAGCTATAAGCCGCTTAAGGATGAGTTAATGGGGC TTAGGAGTAAGGTGAATGAAATTAGAAATAGTATAGGTGAACTTAAGAAGAGGAGGGATGAGTTGAAGGCTGAGAGGGAT GAGATCAAGAAGCAGATGCTGGGCCTCTACGCTAGAATAAAGGAGCTTAAGGAGACTAAGAGGCAGATTATTGATGAGAT TAATAAGAATAGGCTACTCCTAGTGGCTGCAAGGAAATCAGCAGCGGCGGCTGAGAGAAGGAGGAGTGAGGAGTCGGTTA AGGGTGAGTTGAGGAGGAAGGCCATGGAGGCTCTTCAGAAGCTTGAGAAGGGTGAAAGAGTTAGCCTTGATGAGTTAATG GGACTGGAGGACTCAGATGACCAGCAGAGTGAGTGA
Upstream 100 bases:
>100_bases TAAGGTGGGGCAATGAGGTAGAAACCCCCAACTCCCTAAGGGTGGGGTGGTTTACTTTCTCTTGGATAAAGCTTATATAT TGGGTTGTTAAGGGTTGCTT
Downstream 100 bases:
>100_bases CTCTGAACCCATAGAGGTCTCCATTAGGCTTAGGTTAAGTGAGGATAATGAGGTTGTTTACAGGGTTTTTAAGGTAATGG AACCTGAATTCAAGTTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSLLNVEELEKKIEELNVKLNDVNGELDKTYKELNELKGKLNEKRSQLTAVINQLNSKRAELSELKNKINELISKRNNLI EYLKKNKAEKDEVSKRIIQLRDRVRNLRELLKELEASGGRVQDKDKLRVLIERLEFEHDTSPSDLKKEMEFYKTITELEK NLEKAETLDELRNHIANTVKEIEELSRRRTELVNSLKSTYEGSYKPLKDELMGLRSKVNEIRNSIGELKKRRDELKAERD EIKKQMLGLYARIKELKETKRQIIDEINKNRLLLVAARKSAAAAERRRSEESVKGELRRKAMEALQKLEKGERVSLDELM GLEDSDDQQSE
Sequences:
>Translated_331_residues MSLLNVEELEKKIEELNVKLNDVNGELDKTYKELNELKGKLNEKRSQLTAVINQLNSKRAELSELKNKINELISKRNNLI EYLKKNKAEKDEVSKRIIQLRDRVRNLRELLKELEASGGRVQDKDKLRVLIERLEFEHDTSPSDLKKEMEFYKTITELEK NLEKAETLDELRNHIANTVKEIEELSRRRTELVNSLKSTYEGSYKPLKDELMGLRSKVNEIRNSIGELKKRRDELKAERD EIKKQMLGLYARIKELKETKRQIIDEINKNRLLLVAARKSAAAAERRRSEESVKGELRRKAMEALQKLEKGERVSLDELM GLEDSDDQQSE >Mature_330_residues SLLNVEELEKKIEELNVKLNDVNGELDKTYKELNELKGKLNEKRSQLTAVINQLNSKRAELSELKNKINELISKRNNLIE YLKKNKAEKDEVSKRIIQLRDRVRNLRELLKELEASGGRVQDKDKLRVLIERLEFEHDTSPSDLKKEMEFYKTITELEKN LEKAETLDELRNHIANTVKEIEELSRRRTELVNSLKSTYEGSYKPLKDELMGLRSKVNEIRNSIGELKKRRDELKAERDE IKKQMLGLYARIKELKETKRQIIDEINKNRLLLVAARKSAAAAERRRSEESVKGELRRKAMEALQKLEKGERVSLDELMG LEDSDDQQSE
Specific function: Unknown
COG id: COG1340
COG function: function code S; Uncharacterized archaeal coiled-coil protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38781; Mature: 38650
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLNVEELEKKIEELNVKLNDVNGELDKTYKELNELKGKLNEKRSQLTAVINQLNSKRA CCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELSELKNKINELISKRNNLIEYLKKNKAEKDEVSKRIIQLRDRVRNLRELLKELEASGGR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VQDKDKLRVLIERLEFEHDTSPSDLKKEMEFYKTITELEKNLEKAETLDELRNHIANTVK CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIEELSRRRTELVNSLKSTYEGSYKPLKDELMGLRSKVNEIRNSIGELKKRRDELKAERD HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIKKQMLGLYARIKELKETKRQIIDEINKNRLLLVAARKSAAAAERRRSEESVKGELRRK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH AMEALQKLEKGERVSLDELMGLEDSDDQQSE HHHHHHHHHCCCCCCHHHHHCCCCCCCCCCC >Mature Secondary Structure SLLNVEELEKKIEELNVKLNDVNGELDKTYKELNELKGKLNEKRSQLTAVINQLNSKRA CCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELSELKNKINELISKRNNLIEYLKKNKAEKDEVSKRIIQLRDRVRNLRELLKELEASGGR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VQDKDKLRVLIERLEFEHDTSPSDLKKEMEFYKTITELEKNLEKAETLDELRNHIANTVK CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIEELSRRRTELVNSLKSTYEGSYKPLKDELMGLRSKVNEIRNSIGELKKRRDELKAERD HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIKKQMLGLYARIKELKETKRQIIDEINKNRLLLVAARKSAAAAERRRSEESVKGELRRK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH AMEALQKLEKGERVSLDELMGLEDSDDQQSE HHHHHHHHHCCCCCCHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA