Definition Dinoroseobacter shibae DFL 12 chromosome, complete genome.
Accession NC_009952
Length 3,789,584

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 159043505

GI number:

Start: 977230

End: 978582

Strand: Reverse

Name: Not Available

Synonym: Dshi_0953

Alternate gene names: NA

Gene position: NA

Preceding gene: 159043507

Following gene: 159043504

Centisome position: NA

GC content: NA

Gene sequence:

>1353_bases
TTGCCCATGTCCCACGCATCTCCCATCCCCACCACCATATCCGAACTCGCCCCCCTCCTGCGCCTGTCGATCCCGCTGAT
GATCGGGCTCGCCGCCCCGATGCTGATCGGGGTGATCGACACGGTGATGATCGCCCCCCTCGGGACAGAGCCCCTGGCCG
CCGCCGGGATCACCACTTCGGTGGTCATCATCCTGCTGTCCAGCCTGTGGGGCCTCGTGACCATGACAGGTATCCGCATC
GCACAGGCCGAAGGCGCGGGCGACCGTCCGGGCGTAGCGATCGAGCTGAAGACCGGGCTCTGGCTGAGCCTGGCGGCCGG
GGGGCTTGGCATGGCCCTGATGCTGGCGATCCTGCCTGCGCTGGGGCTGCTGGGCCAACCCGACAGCGTGCGCGCGATCC
TGCCCGGCTACTGGGTGTCCATGGCGGTCTGGCTGCTGCCCTTCACGGCGTTCTACGTGATCAAGGGGCTGTTCGACGCG
GTGGACCGTCCCTGGGCCGGGGTGGCGCTCAGCTATCTCGGCGTGGTGGTGAACCTGCCGCTGAACTGGCTGCTGATCTA
TCCCGCGGGGCTGGGACTGCTCGGCGCGGGCCTTGCCAGCATCCTTAGCCAGACCCTCGCCCTCGGGGCGGCCTGGTTGG
TCTGGCGCCGCGCGAAGGGCCTCGCCCCCTGGCGGGTGCCGGTGCCCGCGGGCGCACTGCGCCTGCGCGCCCAGATCCGG
GATGGCTGGCCGCTGGTGGTGGGCTATGCGGGCGAAGGCGGGGCCTATGCCCTGATCGGGTTGATGATGGGCTGGGTCGG
GGCCACGGCGCTGGCCGCGAACCAGATCGTGCATACCGTCGGCGCGGTGGGCTACGTGTTTCCGCTGGGCATGGCCATGG
CGGCCTCGATCCGGGTGGGCCTGGCCCATGGCGCGGGCCAGACCGGACGACTGCGCGCGATCCTGCGCGCCGCCCTGACC
GTGGTCACCGGCTGGATGATCCTGCTGATGGCCTTCTTCCTGATCGCGGGCGACTGGCTCTCGGGCCTGCTGTCGGACGA
CCCGGAGGTCGTCGCGCTGGCCGCCACGCTGTTCATCGCCCTCGCCTGCATGCAGATTGCCGACGGGGTGCAATCGACCA
GCCTCGGCGCTCTGCGCGGCATGGGCGACATGCGCTGGCCCACCGCCATGTCGCTCATCGCCTATTGGCCTCTGGCCCTG
CCCGCGGCCTACGCGCTCGGGTTCTGGGCGGGGCTGGGGGCGCTCGGGCTCTGGGTCGGCTTCGGTCTGGGCCTCGCCAT
CGCCGCCATCATGTTGCCCCTGCGCTTCTGGCACCTTACGGGCAGGGCACCTGCGATGCAGATCGGGCATTGA

Upstream 100 bases:

>100_bases
CCCGGATCGCTAGACCAAGACTACGGCGCGGCCGTCCCCGTGTGGCTGGGGCAAGACACGCAAACCGTTCCGCGGGGGCC
CGCCGCAGGGCGTCAGAGCC

Downstream 100 bases:

>100_bases
TTTCCGCGCGCCCTTGGCCCAAACCGCTGCGAACGATGGGCTACAGGGACGCAGGGCTGACCATGACACGGATCGACGAG
ACATTCGCGCGGCTGCGGGC

Product: MATE efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>450_residues
MPMSHASPIPTTISELAPLLRLSIPLMIGLAAPMLIGVIDTVMIAPLGTEPLAAAGITTSVVIILLSSLWGLVTMTGIRI
AQAEGAGDRPGVAIELKTGLWLSLAAGGLGMALMLAILPALGLLGQPDSVRAILPGYWVSMAVWLLPFTAFYVIKGLFDA
VDRPWAGVALSYLGVVVNLPLNWLLIYPAGLGLLGAGLASILSQTLALGAAWLVWRRAKGLAPWRVPVPAGALRLRAQIR
DGWPLVVGYAGEGGAYALIGLMMGWVGATALAANQIVHTVGAVGYVFPLGMAMAASIRVGLAHGAGQTGRLRAILRAALT
VVTGWMILLMAFFLIAGDWLSGLLSDDPEVVALAATLFIALACMQIADGVQSTSLGALRGMGDMRWPTAMSLIAYWPLAL
PAAYALGFWAGLGALGLWVGFGLGLAIAAIMLPLRFWHLTGRAPAMQIGH

Sequences:
NA

Specific function: NA

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA