Definition Dinoroseobacter shibae DFL 12 chromosome, complete genome.
Accession NC_009952
Length 3,789,584

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The map label for this gene is ydaM

Identifier: 159042885

GI number:

Start: 317056

End: 318645

Strand: Reverse

Name: ydaM

Synonym: Dshi_0329

Alternate gene names: NA

Gene position: NA

Preceding gene: 159042886

Following gene: 159042884

Centisome position: NA

GC content: NA

Gene sequence:

>1590_bases
ATGGCGAGCGCCCGGCATGCGGCGCGCGCAGCAAGAGGCAGTGGCGTGTTGGTTTCACGATTTCTCGATTTCTTCCGATC
CACCGGCAAGCAGTTGTTCCGCGACCCCGCATTGCTGGCCGGGTTCATCCCGCTCTTCGTGGCGCTGTCCTATTCGACGC
GGGACATTCGTTGGCTGATCGGGGCCAGCACGCTCATCCCTTTCCTGGTTCTGGCGATCAGGGCCTTCGATGTGGTCACC
TCTCCAAAGGGCGGGCGCGACGGGCTGACGGGCCTGCCCTGCCGCGCCGCGTTGCTGGAGGTGCTGGACAAGTACTTCGC
CACACCCGGGGCCAGTACCCGGACCGCGGCGTGCATGGTCATCGACCTCGACGACTTTCACAGTTTCAATGAACGCTGGG
GACGTGAGGCTGCAGACGAGGTTCTGCGCCAGACCGCGAATCGCCTGCGCAGCGCCGTGCGCGACAACGACCTCGTGGTG
CGGCTCGATGCGGACGCCTTCGCGCTCTACCTCGCACCATCCGAAGGCATGACGCTCGACTCCACCCTGTCGATCGCCGA
CCGCATCCAGCGCGCCCTCAGCGAGCCGCTGGTGCTGCACGGGCTCACCGCTTATGTCAGCGCCTCGGTCGGGATTGCGC
TTGCCAGCAAATCACCCGAACCGACGGCTGCCAGCCTGCTTGTCGCCGCGGAGCGCGCCATGGTCGAAGCCCGTTCCCAG
GGGGCCGGTGCCCTGCGGCTGTTCTCGGCCGAGATGCAGACGGAGATTCGCGCCAGCCACGAATTGGCCGAAGATCTGGC
CAAGGCACTGGAGAACGGCGAAATCGTTGCCTGGTTCCAGCCTCAGGTCTCCACTGAAACCGGGCAGGTCACGGGCTTCG
AGGCGCTGGCTCGGTGGGACCACCCCAGCCGCGGCATCGTGTCCCCGGCGGAGTTTCTGCCGGCCATCGAAGCCTCCGGA
CGCACCGAACGCCTGAGCGAGGTCATGCTCTACCAGGGGCTGAAAGCCCTCGTCGCATGGGAGCGGGGCGGCTTCGTGAT
CCCCTCCATCGGTGTCAATTTCGCGGGGCTCGAGTTGCGCAATCCCCACCTGATCGACAAGGTGAAATGGGAGCTGGACC
GGTTCGGCCTGACGGCAGATCGGCTGTCGGTGGAAATCCTCGAGACCGTCATCACCGAGACCGATGACGACATAGTTCTT
CGCAATATCAAGGCGCTGGGGGAGCTTGGCTGCGGCATCGACCTCGACGATTTCGGCACCGGCCATGCCTCCATCAGTGC
GATCAAACGCTTCAAGACCAGCCGCATCAAGATCGACCGGTCCTTCGTCACCCATATCGACAAGGATGGGGAGCAGCAGC
GCATGGTCGCCGCCATCCTGACAATGGCGCAGCAACTCCAGGTGGAGTCGCTGGCCGAAGGTGTCGAGACCATCGGTGAA
CACTCGATCCTCGCCCAGCTCGGCTGCCAGCACGTACAGGGGTTCGGGATCGCGCGGCCAATGCCCTTCGAGGACACCTT
TGCCTGGCTGGCCGAGCATGAGCGCAAACGCGCCCCCACGCCCCGGATCGAACGCCAACGCGGCGCTTGA

Upstream 100 bases:

>100_bases
TCGACTTTGCCGGGCTCGGGCTTGCGGACGCATTTTCGGAAAATCCGAAGTAGATTGATCCACCCCGTTAAGGGTCTGCG
CATGGTGATCCCCTAGCCTG

Downstream 100 bases:

>100_bases
GCCGCGGCATTCCGGACGTGTCGCCACCCCCCGGGTGGTCACATTTGGGAAAATGACTTGACCTTTTTCGGTCCACTCGG
TTGAACCCCCCTATCCCAAC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>529_residues
MASARHAARAARGSGVLVSRFLDFFRSTGKQLFRDPALLAGFIPLFVALSYSTRDIRWLIGASTLIPFLVLAIRAFDVVT
SPKGGRDGLTGLPCRAALLEVLDKYFATPGASTRTAACMVIDLDDFHSFNERWGREAADEVLRQTANRLRSAVRDNDLVV
RLDADAFALYLAPSEGMTLDSTLSIADRIQRALSEPLVLHGLTAYVSASVGIALASKSPEPTAASLLVAAERAMVEARSQ
GAGALRLFSAEMQTEIRASHELAEDLAKALENGEIVAWFQPQVSTETGQVTGFEALARWDHPSRGIVSPAEFLPAIEASG
RTERLSEVMLYQGLKALVAWERGGFVIPSIGVNFAGLELRNPHLIDKVKWELDRFGLTADRLSVEILETVITETDDDIVL
RNIKALGELGCGIDLDDFGTGHASISAIKRFKTSRIKIDRSFVTHIDKDGEQQRMVAAILTMAQQLQVESLAEGVETIGE
HSILAQLGCQHVQGFGIARPMPFEDTFAWLAEHERKRAPTPRIERQRGA

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA