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The map label for this gene is rimM

Identifier: 158425577

GI number: 158425577

Start: 4518991

End: 4519524

Strand: Direct

Name: rimM

Synonym: AZC_3953

Alternate gene names: 158425577

Gene position: 4518991-4519524 (Clockwise)

Preceding gene: 158425576

Following gene: 158425578

Centisome position: 84.16

GC content: 69.1

Gene sequence:

>534_bases
ATGACAGATCGCATTCTCATCGCCCGCATCGGTGCGCCCCATGGCGTGAAGGGCGAGGTGCGCCTGTTCGCCTTCGGCGA
AGACCCGCTGGCGCTGAAGCGCTATCCGCTGACCGACGAGAGCGGCGCCCGCCGCTTCAAGGTCCAGTCCCTGCGGGCGG
CCAAGGATCATTTCGTCGCCAGGCTCGAGGGCATCGCCGACCGCAACGCGGCCGAGGCCCTGACCAATACCGACCTCTTC
GTGCCCCGTGACGCCCTGCCCGCGGCTGAGGACGAGGACACCTTCTACCACGCTGATCTCATGGGCCTCCGGGTCGAGGA
TCAGAGCGGCGCGCTGCTCGGCACGGTGCTGGCCATGCACGATTTCGGCGCCGGCGACGTGCTCGAATACACGCCCGAAG
GCGGCGGGCGCACGCTGCTGCTGCCCTTCACCAAGGCCGCCGTGCCGGTGGTGGACGTGCCCGGCGGACGCATCGTGGTG
GTGCCTGACACCAATCCCGACGAGACTCCGCCCGAGGACGCCGATCAGGCCTGA

Upstream 100 bases:

>100_bases
CGCAAGCGGGAGAGGGAGCCTGTCGCGCCGGCGGCAAAGTTGACGCTTCAGATCCCCCGCCTCACCCGAGGCCGGTTCGC
ATTTTCGGTATCCGCATTCC

Downstream 100 bases:

>100_bases
GCCTGCCCGCCGTCAAGTTGACGGCACGGGCAGGCTCCCCCATTCCTGCGCCATGACCTTCCGCGCCACCGTCCTCACCC
TCTATCCCGAGATGTTTCCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MTDRILIARIGAPHGVKGEVRLFAFGEDPLALKRYPLTDESGARRFKVQSLRAAKDHFVARLEGIADRNAAEALTNTDLF
VPRDALPAAEDEDTFYHADLMGLRVEDQSGALLGTVLAMHDFGAGDVLEYTPEGGGRTLLLPFTKAAVPVVDVPGGRIVV
VPDTNPDETPPEDADQA

Sequences:

>Translated_177_residues
MTDRILIARIGAPHGVKGEVRLFAFGEDPLALKRYPLTDESGARRFKVQSLRAAKDHFVARLEGIADRNAAEALTNTDLF
VPRDALPAAEDEDTFYHADLMGLRVEDQSGALLGTVLAMHDFGAGDVLEYTPEGGGRTLLLPFTKAAVPVVDVPGGRIVV
VPDTNPDETPPEDADQA
>Mature_176_residues
TDRILIARIGAPHGVKGEVRLFAFGEDPLALKRYPLTDESGARRFKVQSLRAAKDHFVARLEGIADRNAAEALTNTDLFV
PRDALPAAEDEDTFYHADLMGLRVEDQSGALLGTVLAMHDFGAGDVLEYTPEGGGRTLLLPFTKAAVPVVDVPGGRIVVV
PDTNPDETPPEDADQA

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=131, Percent_Identity=34.3511450381679, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_AZOC5 (A8IKV0)

Other databases:

- EMBL:   AP009384
- RefSeq:   YP_001526869.1
- ProteinModelPortal:   A8IKV0
- SMR:   A8IKV0
- GeneID:   5688017
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3953
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK13828
- BioCyc:   ACAU438753:AZC_3953-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19033; Mature: 18901

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRILIARIGAPHGVKGEVRLFAFGEDPLALKRYPLTDESGARRFKVQSLRAAKDHFVA
CCCEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHH
RLEGIADRNAAEALTNTDLFVPRDALPAAEDEDTFYHADLMGLRVEDQSGALLGTVLAMH
HHHCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEHEEHHH
DFGAGDVLEYTPEGGGRTLLLPFTKAAVPVVDVPGGRIVVVPDTNPDETPPEDADQA
CCCCCCEEEECCCCCCEEEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDRILIARIGAPHGVKGEVRLFAFGEDPLALKRYPLTDESGARRFKVQSLRAAKDHFVA
CCEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHH
RLEGIADRNAAEALTNTDLFVPRDALPAAEDEDTFYHADLMGLRVEDQSGALLGTVLAMH
HHHCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEHEEHHH
DFGAGDVLEYTPEGGGRTLLLPFTKAAVPVVDVPGGRIVVVPDTNPDETPPEDADQA
CCCCCCEEEECCCCCCEEEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA