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The map label for this gene is cbiD [H]

Identifier: 158425569

GI number: 158425569

Start: 4509723

End: 4510898

Strand: Reverse

Name: cbiD [H]

Synonym: AZC_3945

Alternate gene names: 158425569

Gene position: 4510898-4509723 (Counterclockwise)

Preceding gene: 158425573

Following gene: 158425565

Centisome position: 84.01

GC content: 72.45

Gene sequence:

>1176_bases
GTGACGGCGCGCCGCCTGCGGCCTATGAAGGGCCTCATGAGCACAGGCGGCAAGGAAGACGGGCCTTTCGCGGAGCAGCC
GGACGGCGCGCCGGCCCCGAACCTGCGTCGCGGCTGGACGACGGGCACCTGTGCCGCCGGTGCCGCCAAGGCCGCCTTCG
CCGCGCTGGTGACGGGCGCTTTCCCCGATCCCGTCGAGGTGGAGCTTCCGAACGGTGCCCGCCCCGCCTTTGCCCTCGCG
GTGAGCGCGCTCGAAGGCGACAGCGCCCGCGCGGGCATCGTGAAGGATGCCGGCGATGATCCGGACGTGACCCACGGCGC
GCTGGTGAGCGCCACCGTGCGCCGGGGGGCGCCGGGGGCGGGCGTCACCTTCGCGGCGGGGGAAGGGGTCGGCATCGTGA
CGCGCCCCGGCCTTCCCGTTCCGCCCGGCGAGCCGGCCATCAATCCCGTGCCCCGGCGCATGATTGCGCAGGGCATCGCC
GAGGTGGCGGCGGCGGCGGGCGTGCCGGCGGATGTGGCAGTTGAGATTTCCATCGCCGATGGCGCGCGCCTCGCCAAGAA
GACGCTCAATCCCCGCCTCGGCATCGTCGGCGGGCTCTCGGTTCTGGGCACCACGGGCGTGGTGATCCCCTTCTCCTGCG
CGGCCTGGATCCATTCCATCCATCGCGGCATCGATGTGGCCCGCGCCATGGGGCTCGATCATGTGGCGGGCGCCACCGGC
TCGGCCTCCGAGGCGGCGGTGCAGGCGCTCCATCAGCTGCCCGAGACCGCGCTCATCGACATGGGCGATTTCGTCGGCGG
CATGCTGAAATATTTGCGCGCCCATCCGGTGCCGCGCGTCACCATCGCCGGCGGCGTCGCCAAGATGACCAAGCTCGCGC
AGGGGATGCTCGATCTGCATTCCAAGCGCGGCAGCGCCGATCTCACCGCCCTTGCCTATCTCGCGCGCGAGGCCGGCGCG
AGCCTCGATCTCGCCGACCGCATCGGCAGCGCCAATACTGTCGCGCACGCTTTTGACGAGGCCGGGGCCGAAGGCCTGCC
GCTGGGCGATCTCGTTGCGGCGCGGGCGTGGGACGCGGCGGCGGGCGTGATCGCGGGCACGGGCATGGAACTGGAGATCG
TGGTCTTCGACCGCGAGGGCGCGCTGATGGGGCGGACCGGGTTTCGCGCCGGTTAG

Upstream 100 bases:

>100_bases
CGGGCGAGCGCGGCGAGGAGGCCGAGCGTCACCGTGGTCTTGCCGGAGCCCGAGCGCGGGGCGCCGATGAGCAGTCCGTT
GAGGCTCATGGCTGGCCCCC

Downstream 100 bases:

>100_bases
GTTTGCGCGTGGGGAGTCGGTGCTGCTCTGGCGGCAACCGTCATACCCCCCTCCCCAACCCTCCCCCGCAAGGGGGGAGG
GGGTGGGGTACGCGGGATGG

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MTARRLRPMKGLMSTGGKEDGPFAEQPDGAPAPNLRRGWTTGTCAAGAAKAAFAALVTGAFPDPVEVELPNGARPAFALA
VSALEGDSARAGIVKDAGDDPDVTHGALVSATVRRGAPGAGVTFAAGEGVGIVTRPGLPVPPGEPAINPVPRRMIAQGIA
EVAAAAGVPADVAVEISIADGARLAKKTLNPRLGIVGGLSVLGTTGVVIPFSCAAWIHSIHRGIDVARAMGLDHVAGATG
SASEAAVQALHQLPETALIDMGDFVGGMLKYLRAHPVPRVTIAGGVAKMTKLAQGMLDLHSKRGSADLTALAYLAREAGA
SLDLADRIGSANTVAHAFDEAGAEGLPLGDLVAARAWDAAAGVIAGTGMELEIVVFDREGALMGRTGFRAG

Sequences:

>Translated_391_residues
MTARRLRPMKGLMSTGGKEDGPFAEQPDGAPAPNLRRGWTTGTCAAGAAKAAFAALVTGAFPDPVEVELPNGARPAFALA
VSALEGDSARAGIVKDAGDDPDVTHGALVSATVRRGAPGAGVTFAAGEGVGIVTRPGLPVPPGEPAINPVPRRMIAQGIA
EVAAAAGVPADVAVEISIADGARLAKKTLNPRLGIVGGLSVLGTTGVVIPFSCAAWIHSIHRGIDVARAMGLDHVAGATG
SASEAAVQALHQLPETALIDMGDFVGGMLKYLRAHPVPRVTIAGGVAKMTKLAQGMLDLHSKRGSADLTALAYLAREAGA
SLDLADRIGSANTVAHAFDEAGAEGLPLGDLVAARAWDAAAGVIAGTGMELEIVVFDREGALMGRTGFRAG
>Mature_390_residues
TARRLRPMKGLMSTGGKEDGPFAEQPDGAPAPNLRRGWTTGTCAAGAAKAAFAALVTGAFPDPVEVELPNGARPAFALAV
SALEGDSARAGIVKDAGDDPDVTHGALVSATVRRGAPGAGVTFAAGEGVGIVTRPGLPVPPGEPAINPVPRRMIAQGIAE
VAAAAGVPADVAVEISIADGARLAKKTLNPRLGIVGGLSVLGTTGVVIPFSCAAWIHSIHRGIDVARAMGLDHVAGATGS
ASEAAVQALHQLPETALIDMGDFVGGMLKYLRAHPVPRVTIAGGVAKMTKLAQGMLDLHSKRGSADLTALAYLAREAGAS
LDLADRIGSANTVAHAFDEAGAEGLPLGDLVAARAWDAAAGVIAGTGMELEIVVFDREGALMGRTGFRAG

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 39300; Mature: 39169

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00177 TOPOISOMERASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARRLRPMKGLMSTGGKEDGPFAEQPDGAPAPNLRRGWTTGTCAAGAAKAAFAALVTGA
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
FPDPVEVELPNGARPAFALAVSALEGDSARAGIVKDAGDDPDVTHGALVSATVRRGAPGA
CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
GVTFAAGEGVGIVTRPGLPVPPGEPAINPVPRRMIAQGIAEVAAAAGVPADVAVEISIAD
CEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
GARLAKKTLNPRLGIVGGLSVLGTTGVVIPFSCAAWIHSIHRGIDVARAMGLDHVAGATG
CHHHHHHHCCCCCCCEECHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
SASEAAVQALHQLPETALIDMGDFVGGMLKYLRAHPVPRVTIAGGVAKMTKLAQGMLDLH
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH
SKRGSADLTALAYLAREAGASLDLADRIGSANTVAHAFDEAGAEGLPLGDLVAARAWDAA
HCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AGVIAGTGMELEIVVFDREGALMGRTGFRAG
CCCEECCCCEEEEEEECCCCCEECCCCCCCC
>Mature Secondary Structure 
TARRLRPMKGLMSTGGKEDGPFAEQPDGAPAPNLRRGWTTGTCAAGAAKAAFAALVTGA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
FPDPVEVELPNGARPAFALAVSALEGDSARAGIVKDAGDDPDVTHGALVSATVRRGAPGA
CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
GVTFAAGEGVGIVTRPGLPVPPGEPAINPVPRRMIAQGIAEVAAAAGVPADVAVEISIAD
CEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
GARLAKKTLNPRLGIVGGLSVLGTTGVVIPFSCAAWIHSIHRGIDVARAMGLDHVAGATG
CHHHHHHHCCCCCCCEECHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
SASEAAVQALHQLPETALIDMGDFVGGMLKYLRAHPVPRVTIAGGVAKMTKLAQGMLDLH
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH
SKRGSADLTALAYLAREAGASLDLADRIGSANTVAHAFDEAGAEGLPLGDLVAARAWDAA
HCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AGVIAGTGMELEIVVFDREGALMGRTGFRAG
CCCEECCCCEEEEEEECCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA