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The map label for this gene is polA [H]

Identifier: 158425553

GI number: 158425553

Start: 4491798

End: 4492418

Strand: Reverse

Name: polA [H]

Synonym: AZC_3929

Alternate gene names: 158425553

Gene position: 4492418-4491798 (Counterclockwise)

Preceding gene: 158425554

Following gene: 158425552

Centisome position: 83.66

GC content: 67.95

Gene sequence:

>621_bases
ATGACCATCCGCCTGCACCGGGGCGACCTGCCCGACAGCTTCCAGCCCGCCCCGGTGGTTGCCATCGATACCGAGACGCT
CGGCCTGAAGCCTCACCGCGACCGCCTCTGCGTGGTTCAGCTCTCGAACGGCGACGGTACGGCCGATGTGGTGCAGATCC
CGGCCGGCGCCACGGCGGAGAGCGCGCCCAATCTGGTGCGCATGCTGGCCGATCCCAATGTGGTGAAGCTGTTTCACTTC
GGGCGATTCGACATCGCGGTGCTGCTGCACACCTTCGGCGTCACCACCGCTCCGGTGTTCTGCACCAAGATCGCCTCGCG
CCTGACCCGCACCTACACCGACCGGCACGGCCTCAAGGATCTGGTGCGCGAGCTGCTCGGCGTCGATCTGTCGAAGCAGC
AGCAGAGCTCCGACTGGGCGGCCAGCGAGCTCACCGACGCCCAGCTCGCCTATGCCGCGTCGGACGTGCTGCACTTGCAC
GCGTGCAAGGAAAAGCTGGAGGCCATGCTGGCCCGCGACGGCCGCACCGCGCTCGCCGCCGAATGCTTCAAGTTCCTGCC
GGCGCGCGCCGCGCTTGATCTCGCCGGCTGGCCGGACGAGGACATCTTCGCTCATTCGTGA

Upstream 100 bases:

>100_bases
TTTTGCCCGTCGCGGTGCCCGCGCATCCGGCGCCATGTTGCCAGCCGGAGCCGCGCTCCATTACAAGCCGCGCAACCTTC
CATTTCCGGAACCGCCGTCC

Downstream 100 bases:

>100_bases
GCGCAAACGGTGGCCGGGTGCAGGCGCATCCGGAGGCCGCAGCCTTGCGCCGGGCCTGCCGCGGGCCATATGCCCGCAGT
GGATGCGAAGCACAAAGTGT

Product: 3'-5' exonuclease

Products: NA

Alternate protein names: POL I [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTIRLHRGDLPDSFQPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATAESAPNLVRMLADPNVVKLFHF
GRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLKDLVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLH
ACKEKLEAMLARDGRTALAAECFKFLPARAALDLAGWPDEDIFAHS

Sequences:

>Translated_206_residues
MTIRLHRGDLPDSFQPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATAESAPNLVRMLADPNVVKLFHF
GRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLKDLVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLH
ACKEKLEAMLARDGRTALAAECFKFLPARAALDLAGWPDEDIFAHS
>Mature_205_residues
TIRLHRGDLPDSFQPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATAESAPNLVRMLADPNVVKLFHFG
RFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLKDLVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLHA
CKEKLEAMLARDGRTALAAECFKFLPARAALDLAGWPDEDIFAHS

Specific function: Cleaves Multimeric tRNA Precursor At The Spacer Region. [C]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 3'-5' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI1788105, Length=150, Percent_Identity=34.6666666666667, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR019760
- InterPro:   IPR001098
- InterPro:   IPR002298
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00476 DNA_pol_A [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 22441; Mature: 22310

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRLHRGDLPDSFQPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATAE
CEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCH
SAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLKD
HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH
LVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLHACKEKLEAMLARDGRTALAA
HHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ECFKFLPARAALDLAGWPDEDIFAHS
HHHHHHHHHHHEECCCCCCCCCCCCC
>Mature Secondary Structure 
TIRLHRGDLPDSFQPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATAE
EEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCH
SAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLKD
HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH
LVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLHACKEKLEAMLARDGRTALAA
HHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ECFKFLPARAALDLAGWPDEDIFAHS
HHHHHHHHHHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]