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The map label for this gene is amiR

Identifier: 158425514

GI number: 158425514

Start: 4441784

End: 4442449

Strand: Reverse

Name: amiR

Synonym: AZC_3890

Alternate gene names: NA

Gene position: 4442449-4441784 (Counterclockwise)

Preceding gene: 158425515

Following gene: 158425513

Centisome position: 82.73

GC content: 68.02

Gene sequence:

>666_bases
ATGTCTGCTCGACTGGTTCAGAACTTCAAAGGTGGCCGCGCATTCATCGTGACGGCGACCCCCGGCCTTGAGGGCGCGCT
GGCGCCGACGCTTGCCCGCCTCGGGGTGGAGAGCCTGTATCCCCGTCTGGTGAACGGCCGGGCCGAGATCCCCTTCGAGA
CGCTGCGTCCCGAACGGGACATGCTGTTCGTGGATGGCGATCTGGAGGGCGCCGTCGGCCTTGAACTGGAGGATGCGGAG
GCGCTCCCGCCGGTGCCGGTGATTGGCCTCGTGGGCGTTGAGGCGCCAAGCCGCCTCAAGGCGCTGGTGCATGTCGGCGC
CACCGCCTTCCTGCGCAAGCCCGTTCATGGCGGCGCGGTCTATGCGGCCCTCTTCATGGGCATCAACCAGTTCCAGCTGC
GCAGCCAGATGTGCGCGCGCTTCGAGGCGTTGCAGGCCCGCCAGCGCGGCCGCCGCTTTGTCTTCCAGGCCACCCTTCAG
GTGATGGCGCGCACCGGCCTCGACGAGGATCAGGCCTATGCCCAGCTCCGGCACGAGAGCATGCGCACCCGCCAGGCGTT
GGAAGTGTATTGCGAGGACTTCGTGAAGCGGCATCACAAGACCGCGACGGCCTCCCTCCGGTCCGAAGGCGCTCCGCCCC
GGCCCGGCAAGCCAAAGGCAATGTAG

Upstream 100 bases:

>100_bases
TGGAGGCGCCCCATCCGGTGGCGCCCGATCCTTACCTTGTCCAGTCCTCGCCCCGGCTTTCTGTGCCGATGCGCCCCCCC
AAGCTGAGAGTGGTGCAGTG

Downstream 100 bases:

>100_bases
GAGAACCGACCAGATGAAGAAGAGCGTTTTGCGGGGGCTGCGGGCCGCAGCCTTCTCGGGAACACTTGTGCTCGGTTCCG
GGGCGGCCTTCGCGGCAGAC

Product: antitermination protein

Products: NA

Alternate protein names: Response Regulator Receiver And ANTAR Domain Protein; Antitermination Protein; ANTAR Domain Protein

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSARLVQNFKGGRAFIVTATPGLEGALAPTLARLGVESLYPRLVNGRAEIPFETLRPERDMLFVDGDLEGAVGLELEDAE
ALPPVPVIGLVGVEAPSRLKALVHVGATAFLRKPVHGGAVYAALFMGINQFQLRSQMCARFEALQARQRGRRFVFQATLQ
VMARTGLDEDQAYAQLRHESMRTRQALEVYCEDFVKRHHKTATASLRSEGAPPRPGKPKAM

Sequences:

>Translated_221_residues
MSARLVQNFKGGRAFIVTATPGLEGALAPTLARLGVESLYPRLVNGRAEIPFETLRPERDMLFVDGDLEGAVGLELEDAE
ALPPVPVIGLVGVEAPSRLKALVHVGATAFLRKPVHGGAVYAALFMGINQFQLRSQMCARFEALQARQRGRRFVFQATLQ
VMARTGLDEDQAYAQLRHESMRTRQALEVYCEDFVKRHHKTATASLRSEGAPPRPGKPKAM
>Mature_220_residues
SARLVQNFKGGRAFIVTATPGLEGALAPTLARLGVESLYPRLVNGRAEIPFETLRPERDMLFVDGDLEGAVGLELEDAEA
LPPVPVIGLVGVEAPSRLKALVHVGATAFLRKPVHGGAVYAALFMGINQFQLRSQMCARFEALQARQRGRRFVFQATLQV
MARTGLDEDQAYAQLRHESMRTRQALEVYCEDFVKRHHKTATASLRSEGAPPRPGKPKAM

Specific function: Unknown

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24248; Mature: 24117

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARLVQNFKGGRAFIVTATPGLEGALAPTLARLGVESLYPRLVNGRAEIPFETLRPERD
CCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHCCCCC
MLFVDGDLEGAVGLELEDAEALPPVPVIGLVGVEAPSRLKALVHVGATAFLRKPVHGGAV
EEEECCCCCCCCCCEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHH
YAALFMGINQFQLRSQMCARFEALQARQRGRRFVFQATLQVMARTGLDEDQAYAQLRHES
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MRTRQALEVYCEDFVKRHHKTATASLRSEGAPPRPGKPKAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SARLVQNFKGGRAFIVTATPGLEGALAPTLARLGVESLYPRLVNGRAEIPFETLRPERD
CCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHCCCCC
MLFVDGDLEGAVGLELEDAEALPPVPVIGLVGVEAPSRLKALVHVGATAFLRKPVHGGAV
EEEECCCCCCCCCCEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHH
YAALFMGINQFQLRSQMCARFEALQARQRGRRFVFQATLQVMARTGLDEDQAYAQLRHES
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MRTRQALEVYCEDFVKRHHKTATASLRSEGAPPRPGKPKAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA