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The map label for this gene is yagA [H]

Identifier: 158425502

GI number: 158425502

Start: 4429297

End: 4430262

Strand: Reverse

Name: yagA [H]

Synonym: AZC_3878

Alternate gene names: 158425502

Gene position: 4430262-4429297 (Counterclockwise)

Preceding gene: 158425503

Following gene: 158425493

Centisome position: 82.5

GC content: 66.25

Gene sequence:

>966_bases
TTGTTGCGACACGACCGACCGCAGGACACGAGGATGAACTACCCGCACCAGAATGCGCGAACGAAGCCGCTTGGTCGAGC
GGAGATAGTTCGGCGGATCGTCGAGGAGGGCCTGCCAGTCGCCGAAGTGGCGGCCGGCTTCGGGATCAGCGAAAGGACGG
CCCGCAAGTGGCTCGCCCGCTGGCGGGCCGAGGGGGCGTCGGGCCTTCAGAACCGCTCGTCCCGCCCGCACGCCGCTGAC
GATGAGGCTGGCCGGTTCTGGCGGGAAATAACAGCTTGCCTGCGTCGGGAGTATCGGTTGAGCGGCGAGGAGATCGCCGT
CCGGCTGGGCTTTGCCCGCTCCAAGGTGGCCAGATGGCTGACGCGGATACGGCTCGGAAGCCTTGCCGCGTTGATGCCCC
AGGAGCCGGTCCGACGCTATCAGCGCGAGCGGCCGGGCGAGTTGATCCATCTCGACATCAAGAAGCTCGCCCGCTTCGCA
GGTGTCGGCCACCGCATCACCGGCAACCGGCGTGGAGCCAGTGAAGGCATGGGCTACGACTTCCTGCATGTGGCCATCGA
TGACGCCACCCGTCTTGCCTATGTGGAAGTGCTGCCCGACGAGCGGCGGGGATCGACGACAGGCTTCCTCATTCGCGCCC
TGCGCTGGTTCCGGGCGCGCGGCATACGGGTCGAGCGGGGGATGACCGACAACGGGGCCGGCTACATCGCCAGGCTGTTC
CGTAAGGTGCTGCGGATGCTGGGCATCCGGCACATCCGCACCCGGCCCTACACGCCGAAGACCAATGGCAAGGCCGAGCG
TTTCATTCAGACCCTGCTGCGCGAATGGGCCTATGCCATCCCGTTCCCGTCTTCTGAACGCCGCGCCGCCAACCTGCCTC
GATGGCTCGCCTGGTACAATCACCAAAGGCCCCATGGTAGCCTCGACCGGAGAACACCTGTTCAGGCTCTCGCCGGAACA
ACCTGA

Upstream 100 bases:

>100_bases
CGCGAAGGACACGCTTCGCCCCCCTGATGGCCATTCACCGCTGACACCTAGCTGTGGCTTCCGGAGAGGTTGTTCATCGC
CCGTGAGAGCCTGAAGGTGG

Downstream 100 bases:

>100_bases
TCAGAAATCACACCTAGCGGTCGCAGGTCGCCTACATAGGTTCGATCCGTGCACCGCGATGCTGTCCCGCTGCCGTCGCA
ATATCTGCGCACCAAGGAAG

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MLRHDRPQDTRMNYPHQNARTKPLGRAEIVRRIVEEGLPVAEVAAGFGISERTARKWLARWRAEGASGLQNRSSRPHAAD
DEAGRFWREITACLRREYRLSGEEIAVRLGFARSKVARWLTRIRLGSLAALMPQEPVRRYQRERPGELIHLDIKKLARFA
GVGHRITGNRRGASEGMGYDFLHVAIDDATRLAYVEVLPDERRGSTTGFLIRALRWFRARGIRVERGMTDNGAGYIARLF
RKVLRMLGIRHIRTRPYTPKTNGKAERFIQTLLREWAYAIPFPSSERRAANLPRWLAWYNHQRPHGSLDRRTPVQALAGT
T

Sequences:

>Translated_321_residues
MLRHDRPQDTRMNYPHQNARTKPLGRAEIVRRIVEEGLPVAEVAAGFGISERTARKWLARWRAEGASGLQNRSSRPHAAD
DEAGRFWREITACLRREYRLSGEEIAVRLGFARSKVARWLTRIRLGSLAALMPQEPVRRYQRERPGELIHLDIKKLARFA
GVGHRITGNRRGASEGMGYDFLHVAIDDATRLAYVEVLPDERRGSTTGFLIRALRWFRARGIRVERGMTDNGAGYIARLF
RKVLRMLGIRHIRTRPYTPKTNGKAERFIQTLLREWAYAIPFPSSERRAANLPRWLAWYNHQRPHGSLDRRTPVQALAGT
T
>Mature_321_residues
MLRHDRPQDTRMNYPHQNARTKPLGRAEIVRRIVEEGLPVAEVAAGFGISERTARKWLARWRAEGASGLQNRSSRPHAAD
DEAGRFWREITACLRREYRLSGEEIAVRLGFARSKVARWLTRIRLGSLAALMPQEPVRRYQRERPGELIHLDIKKLARFA
GVGHRITGNRRGASEGMGYDFLHVAIDDATRLAYVEVLPDERRGSTTGFLIRALRWFRARGIRVERGMTDNGAGYIARLF
RKVLRMLGIRHIRTRPYTPKTNGKAERFIQTLLREWAYAIPFPSSERRAANLPRWLAWYNHQRPHGSLDRRTPVQALAGT
T

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=320, Percent_Identity=29.375, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790724, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789424, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789224, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788305, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787669, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786558, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 36958; Mature: 36958

Theoretical pI: Translated: 11.94; Mature: 11.94

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRHDRPQDTRMNYPHQNARTKPLGRAEIVRRIVEEGLPVAEVAAGFGISERTARKWLAR
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
WRAEGASGLQNRSSRPHAADDEAGRFWREITACLRREYRLSGEEIAVRLGFARSKVARWL
HHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEHHHHHHHHHHHHH
TRIRLGSLAALMPQEPVRRYQRERPGELIHLDIKKLARFAGVGHRITGNRRGASEGMGYD
HHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCE
FLHVAIDDATRLAYVEVLPDERRGSTTGFLIRALRWFRARGIRVERGMTDNGAGYIARLF
EEEEEECCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHH
RKVLRMLGIRHIRTRPYTPKTNGKAERFIQTLLREWAYAIPFPSSERRAANLPRWLAWYN
HHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHC
HQRPHGSLDRRTPVQALAGTT
CCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MLRHDRPQDTRMNYPHQNARTKPLGRAEIVRRIVEEGLPVAEVAAGFGISERTARKWLAR
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
WRAEGASGLQNRSSRPHAADDEAGRFWREITACLRREYRLSGEEIAVRLGFARSKVARWL
HHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEHHHHHHHHHHHHH
TRIRLGSLAALMPQEPVRRYQRERPGELIHLDIKKLARFAGVGHRITGNRRGASEGMGYD
HHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCE
FLHVAIDDATRLAYVEVLPDERRGSTTGFLIRALRWFRARGIRVERGMTDNGAGYIARLF
EEEEEECCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHH
RKVLRMLGIRHIRTRPYTPKTNGKAERFIQTLLREWAYAIPFPSSERRAANLPRWLAWYN
HHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHC
HQRPHGSLDRRTPVQALAGTT
CCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]