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The map label for this gene is yubM [H]

Identifier: 158425467

GI number: 158425467

Start: 4392108

End: 4394171

Strand: Reverse

Name: yubM [H]

Synonym: AZC_3843

Alternate gene names: 158425467

Gene position: 4394171-4392108 (Counterclockwise)

Preceding gene: 158425468

Following gene: 158425466

Centisome position: 81.83

GC content: 67.93

Gene sequence:

>2064_bases
ATGGCGACCACTGTTCAGAAGATCACGCTCTCGCCCTCGCGTGACATCCCCTTGAACAAGCTCTTGCTCAGCCAGTCGAA
CGTCCGGCGCGTCAAGGCCGGCGTCTCGATCGAGGAACTGGCCGAGGACATCGCCCGCCGCGGCCTGCTGCAGGGCCTCA
GCGTTCGCCCCGTCGTCGATGGCGCCGGCGTCGAGACCGGCATGTTCGAGATCCCGGCCGGCGGGCGGCGCTATCGGGCG
CTGGAACTGCTGGTGAAGCAGAAGCGCCTCGCAAGGACCGCGCCGGTGCCCTGCGTCATCCGAGAGGGCGGCATCGCCGA
AGAGGATTCGCTCGCTGAGAACGTCCAGCGCGCGCCGCTGCACCCGCTCGACCAGTTCCGCGCCTTCCTCGCCCTGCGTG
AGAAGGGCCAGTCCGAAGAAGAGATCGCCGCCGCCTTCTTCGTCTCGGTCAACGTGGTGAAGCAGCGCCTCAAGCTCGCC
TCGGTCTCGCCGGTGCTGCTGGAGGTCTATGCCGAGGACGGCCTGACGCTCGACCAACTCATGGCCTTCACCGTCTCCGG
CGACCCTGCGCGCCAGGAACAGGTCTTCGAGCGGCTGAAGACCTCCTATGACAAGCATCCCTATGCCATCCGTCGCATGC
TGACCGAAGGGGCTGTCCGCGCCTGCGACAAGCGGGCCCAGTTCATCGGCCTCCAGGCCTATGTCGAGGCCGGCGGGATC
ATCCTGCGCGACCTGTTCCAGGGCGATGATGGCGGCTGGCTGCAGGATGTCGCGCTGGTCGACCGGCTGGTGGCCGAGAA
GCTCAAGGCCGAGGCCGACGCTGTCGCCATGGAGGGGTGGAAGTGGGTCGAGATGGCCCCCGACTTCGCCTATGGCCACA
CCTACGGCCTGCGGCAGCTGCGCGGCGAGACCATCACGCTCACCGCCGAGGAAGAAGTCAGCCACGACGCCCTGCAGGCG
GAATATCATCGCCTGTCCACTGAATACGCTGAGGCGGACGAGTTGCCGGAGGAGGTCGACGCACGGCTCGGCGAGATCGA
GACGGCAATCGACGCTTTCGAGGCGCGTCCGATCACTTTCGATCCGGTGGAGATGGCGCGCGCCGGCGCCTTCGTCAGCA
TCGCCCATGACGGCGCGGTGCGCATTGAGCGCGGTTATGTCCGGCCCGAGGACGAACTGCCGGTGGAGCCCGAAGTCGCG
GTGGAAGACGCCGGCCCGCACCACATCGTGGCGGCGGCTATGCGTACCGGCAAGGCCGTCATGGCAGACGCGCCGACGCC
CGAGTCCGAGGAGGACGAAGGGCTGTCTGCGCTCTCGGACCGGCTGATGACCGAGCTGACCTCGCATCGCACGCTCGGCC
TGCGCCAGGCGCTAGGCGAACGGCCCGATGTCGCCTTCCTCGCGGCCCTGCATGCCCTGACGCTGAAGAGCTTCTACCAC
TACGACTCGGATAGCTGCCTCGAACTCGACCTGAAGAGCGTGGCGTTCAGCGCGCAGGCGCCGGGGCTGAACGACAGCGC
CTCGGCTGCGGCAATCCACGCCCGGCATGGGGGATGGGCGAAGGTCCTGCCGAAGGACTCGGCCGACCTTTGGGAGGCGC
TGCAGGACTGGGAGAGCGAAAGCCGCTCCCGCCTATTCGCCCATGTGTTGAGCCTGTCGGTGAATGCTGTTCATGAGGCC
TGGAACCGGCGGCCCCGTGCCCTCCACCATGCGGATCAACTCGCGCGCGCCGTCGACCTCGACATGGCTGCCGCCGGGTG
GAGGCCGACCGTGGACAATTTCCTCGGCCGGGTCATCAAGGCCCGCATCCTGCAGGCGGTGAGCGAGGCGAAGGGCGCAC
GTGCGGCGGAACGCATCGCGCATCTGAAGAAGGGCGACATGGCCCGCGAGGCCGAAACGCTGCTGGCCGACACCGGCTGG
CTGCCGGAACCGCTGCGCGGAGCCGAACCGGCGGCAGGCGAAGAAACGGCGGTGCAGGACGGCACAACGGCCATGGGCGA
AGACGAAAGCCCAGGGGATACTGAGGACGCCACGGACATCCCCCCTGCCGTGGCGGCGGAGTAA

Upstream 100 bases:

>100_bases
TGCGGCGTCGCCCTCCAGAGTGAGAGGGCGGCGCTGCGCTTCGTGACGGGTTGGAGGCCGAGAGAGAGGCTCTTGGCCGC
CCGTCACGGAGGTGCCTTCC

Downstream 100 bases:

>100_bases
CGCTCAACACGATCTCGGCCCGCCGGCTCTGTCGGCGGGCCTTTGTTTTGAAAAGCTCGCCATGTCCGGGATTGCTCACG
ATCTGTCGCTCCGGCTTGCC

Product: ParB-like partition protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 686

Protein sequence:

>687_residues
MATTVQKITLSPSRDIPLNKLLLSQSNVRRVKAGVSIEELAEDIARRGLLQGLSVRPVVDGAGVETGMFEIPAGGRRYRA
LELLVKQKRLARTAPVPCVIREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEIAAAFFVSVNVVKQRLKLA
SVSPVLLEVYAEDGLTLDQLMAFTVSGDPARQEQVFERLKTSYDKHPYAIRRMLTEGAVRACDKRAQFIGLQAYVEAGGI
ILRDLFQGDDGGWLQDVALVDRLVAEKLKAEADAVAMEGWKWVEMAPDFAYGHTYGLRQLRGETITLTAEEEVSHDALQA
EYHRLSTEYAEADELPEEVDARLGEIETAIDAFEARPITFDPVEMARAGAFVSIAHDGAVRIERGYVRPEDELPVEPEVA
VEDAGPHHIVAAAMRTGKAVMADAPTPESEEDEGLSALSDRLMTELTSHRTLGLRQALGERPDVAFLAALHALTLKSFYH
YDSDSCLELDLKSVAFSAQAPGLNDSASAAAIHARHGGWAKVLPKDSADLWEALQDWESESRSRLFAHVLSLSVNAVHEA
WNRRPRALHHADQLARAVDLDMAAAGWRPTVDNFLGRVIKARILQAVSEAKGARAAERIAHLKKGDMAREAETLLADTGW
LPEPLRGAEPAAGEETAVQDGTTAMGEDESPGDTEDATDIPPAVAAE

Sequences:

>Translated_687_residues
MATTVQKITLSPSRDIPLNKLLLSQSNVRRVKAGVSIEELAEDIARRGLLQGLSVRPVVDGAGVETGMFEIPAGGRRYRA
LELLVKQKRLARTAPVPCVIREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEIAAAFFVSVNVVKQRLKLA
SVSPVLLEVYAEDGLTLDQLMAFTVSGDPARQEQVFERLKTSYDKHPYAIRRMLTEGAVRACDKRAQFIGLQAYVEAGGI
ILRDLFQGDDGGWLQDVALVDRLVAEKLKAEADAVAMEGWKWVEMAPDFAYGHTYGLRQLRGETITLTAEEEVSHDALQA
EYHRLSTEYAEADELPEEVDARLGEIETAIDAFEARPITFDPVEMARAGAFVSIAHDGAVRIERGYVRPEDELPVEPEVA
VEDAGPHHIVAAAMRTGKAVMADAPTPESEEDEGLSALSDRLMTELTSHRTLGLRQALGERPDVAFLAALHALTLKSFYH
YDSDSCLELDLKSVAFSAQAPGLNDSASAAAIHARHGGWAKVLPKDSADLWEALQDWESESRSRLFAHVLSLSVNAVHEA
WNRRPRALHHADQLARAVDLDMAAAGWRPTVDNFLGRVIKARILQAVSEAKGARAAERIAHLKKGDMAREAETLLADTGW
LPEPLRGAEPAAGEETAVQDGTTAMGEDESPGDTEDATDIPPAVAAE
>Mature_686_residues
ATTVQKITLSPSRDIPLNKLLLSQSNVRRVKAGVSIEELAEDIARRGLLQGLSVRPVVDGAGVETGMFEIPAGGRRYRAL
ELLVKQKRLARTAPVPCVIREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEIAAAFFVSVNVVKQRLKLAS
VSPVLLEVYAEDGLTLDQLMAFTVSGDPARQEQVFERLKTSYDKHPYAIRRMLTEGAVRACDKRAQFIGLQAYVEAGGII
LRDLFQGDDGGWLQDVALVDRLVAEKLKAEADAVAMEGWKWVEMAPDFAYGHTYGLRQLRGETITLTAEEEVSHDALQAE
YHRLSTEYAEADELPEEVDARLGEIETAIDAFEARPITFDPVEMARAGAFVSIAHDGAVRIERGYVRPEDELPVEPEVAV
EDAGPHHIVAAAMRTGKAVMADAPTPESEEDEGLSALSDRLMTELTSHRTLGLRQALGERPDVAFLAALHALTLKSFYHY
DSDSCLELDLKSVAFSAQAPGLNDSASAAAIHARHGGWAKVLPKDSADLWEALQDWESESRSRLFAHVLSLSVNAVHEAW
NRRPRALHHADQLARAVDLDMAAAGWRPTVDNFLGRVIKARILQAVSEAKGARAAERIAHLKKGDMAREAETLLADTGWL
PEPLRGAEPAAGEETAVQDGTTAMGEDESPGDTEDATDIPPAVAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 74941; Mature: 74810

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTVQKITLSPSRDIPLNKLLLSQSNVRRVKAGVSIEELAEDIARRGLLQGLSVRPVVD
CCCCEEEEEECCCCCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC
GAGVETGMFEIPAGGRRYRALELLVKQKRLARTAPVPCVIREGGIAEEDSLAENVQRAPL
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC
HPLDQFRAFLALREKGQSEEEIAAAFFVSVNVVKQRLKLASVSPVLLEVYAEDGLTLDQL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
MAFTVSGDPARQEQVFERLKTSYDKHPYAIRRMLTEGAVRACDKRAQFIGLQAYVEAGGI
HEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ILRDLFQGDDGGWLQDVALVDRLVAEKLKAEADAVAMEGWKWVEMAPDFAYGHTYGLRQL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
RGETITLTAEEEVSHDALQAEYHRLSTEYAEADELPEEVDARLGEIETAIDAFEARPITF
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
DPVEMARAGAFVSIAHDGAVRIERGYVRPEDELPVEPEVAVEDAGPHHIVAAAMRTGKAV
CHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE
MADAPTPESEEDEGLSALSDRLMTELTSHRTLGLRQALGERPDVAFLAALHALTLKSFYH
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
YDSDSCLELDLKSVAFSAQAPGLNDSASAAAIHARHGGWAKVLPKDSADLWEALQDWESE
CCCCCCEEHHHHHHHHHCCCCCCCCCCCHHEEEECCCCEEECCCCCCHHHHHHHHHHHHH
SRSRLFAHVLSLSVNAVHEAWNRRPRALHHADQLARAVDLDMAAAGWRPTVDNFLGRVIK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ARILQAVSEAKGARAAERIAHLKKGDMAREAETLLADTGWLPEPLRGAEPAAGEETAVQD
HHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
GTTAMGEDESPGDTEDATDIPPAVAAE
CCCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure 
ATTVQKITLSPSRDIPLNKLLLSQSNVRRVKAGVSIEELAEDIARRGLLQGLSVRPVVD
CCCEEEEEECCCCCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC
GAGVETGMFEIPAGGRRYRALELLVKQKRLARTAPVPCVIREGGIAEEDSLAENVQRAPL
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC
HPLDQFRAFLALREKGQSEEEIAAAFFVSVNVVKQRLKLASVSPVLLEVYAEDGLTLDQL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
MAFTVSGDPARQEQVFERLKTSYDKHPYAIRRMLTEGAVRACDKRAQFIGLQAYVEAGGI
HEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ILRDLFQGDDGGWLQDVALVDRLVAEKLKAEADAVAMEGWKWVEMAPDFAYGHTYGLRQL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
RGETITLTAEEEVSHDALQAEYHRLSTEYAEADELPEEVDARLGEIETAIDAFEARPITF
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
DPVEMARAGAFVSIAHDGAVRIERGYVRPEDELPVEPEVAVEDAGPHHIVAAAMRTGKAV
CHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE
MADAPTPESEEDEGLSALSDRLMTELTSHRTLGLRQALGERPDVAFLAALHALTLKSFYH
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
YDSDSCLELDLKSVAFSAQAPGLNDSASAAAIHARHGGWAKVLPKDSADLWEALQDWESE
CCCCCCEEHHHHHHHHHCCCCCCCCCCCHHEEEECCCCEEECCCCCCHHHHHHHHHHHHH
SRSRLFAHVLSLSVNAVHEAWNRRPRALHHADQLARAVDLDMAAAGWRPTVDNFLGRVIK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ARILQAVSEAKGARAAERIAHLKKGDMAREAETLLADTGWLPEPLRGAEPAAGEETAVQD
HHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
GTTAMGEDESPGDTEDATDIPPAVAAE
CCCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]