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The map label for this gene is nodB

Identifier: 158425441

GI number: 158425441

Start: 4371283

End: 4371915

Strand: Reverse

Name: nodB

Synonym: AZC_3817

Alternate gene names: 158425441

Gene position: 4371915-4371283 (Counterclockwise)

Preceding gene: 158425442

Following gene: 158425440

Centisome position: 81.42

GC content: 52.76

Gene sequence:

>633_bases
ATGAGTGTCCTTGGGCAAGCTGCACGAATCACGCAGAATCAGAGTTCAATATACATCACGTTCGATGATGGGCCGCACCC
GAGCGTGACGCCAGCAGTATGCGAAATACTGAGAGAGCACTCGGCTCTTGCGACATTTTTTCAAATAGGCCGGTTTGCAA
AAGAATACCCTAGTATATCACGACAGTGCCAATTGGACGGTCACGCTATTGGAAATCATACGTTCGACCATCCCAATCTA
CAAGACCGGGCCGGCGAGGAAGTAGAGTATCAAATATCGTCTGCGCAAAAATGCCTCGAGCATATCTGTGGTCGCGGATT
TGTTCGGCACTTCCGTGCCCCATACGGCGCGTGGAGCACCCAGATATTAAACGTTGTGAATAAAATCGGCTTGCGGCCTG
TCTCGTGGTCTGTCGACCCGAGAGATTGGGAGGCGCCGAGAATAGAAAATCTCATCAATGAGATATTAGATAACGCTCGA
CCTGGCTCGATAATTCTTCTGCACGACGGGTGCCCTCCAGATGAAGCTGCGATGTGGGACGTGCGTGGTGGCCGAGCTCA
GACATTAGCGGCGCTCCGGTACGTCGTTCCAGCTCTTCAGGCGCGCGGATTTGCGCTTCAGCCGTTGCCATGA

Upstream 100 bases:

>100_bases
CGACCAAAATCGAGAAAAAAGCCGCCGTTATACTCCCGCTTACCGAGACCTTAGATCGTTGGCCAGAGGGTGTTGACATC
GAAAGGAATGGGCCAGAGCT

Downstream 100 bases:

>100_bases
GGCGAGTCGACAAGAAAAGAGATGCCAGATGAGTGTCGTAGATGTGATCGGTTTGCTTGCGACTGCAGCCTACGTGACGT
TGGCGAGCGCATACAAGGTG

Product: chitooligosaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSVLGQAARITQNQSSIYITFDDGPHPSVTPAVCEILREHSALATFFQIGRFAKEYPSISRQCQLDGHAIGNHTFDHPNL
QDRAGEEVEYQISSAQKCLEHICGRGFVRHFRAPYGAWSTQILNVVNKIGLRPVSWSVDPRDWEAPRIENLINEILDNAR
PGSIILLHDGCPPDEAAMWDVRGGRAQTLAALRYVVPALQARGFALQPLP

Sequences:

>Translated_210_residues
MSVLGQAARITQNQSSIYITFDDGPHPSVTPAVCEILREHSALATFFQIGRFAKEYPSISRQCQLDGHAIGNHTFDHPNL
QDRAGEEVEYQISSAQKCLEHICGRGFVRHFRAPYGAWSTQILNVVNKIGLRPVSWSVDPRDWEAPRIENLINEILDNAR
PGSIILLHDGCPPDEAAMWDVRGGRAQTLAALRYVVPALQARGFALQPLP
>Mature_209_residues
SVLGQAARITQNQSSIYITFDDGPHPSVTPAVCEILREHSALATFFQIGRFAKEYPSISRQCQLDGHAIGNHTFDHPNLQ
DRAGEEVEYQISSAQKCLEHICGRGFVRHFRAPYGAWSTQILNVVNKIGLRPVSWSVDPRDWEAPRIENLINEILDNARP
GSIILLHDGCPPDEAAMWDVRGGRAQTLAALRYVVPALQARGFALQPLP

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=158, Percent_Identity=33.5443037974684, Blast_Score=82, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6323339, Length=163, Percent_Identity=31.2883435582822, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODB_AZOC5 (Q07740)

Other databases:

- EMBL:   L18897
- EMBL:   AP009384
- PIR:   JQ0394
- RefSeq:   YP_001526733.1
- ProteinModelPortal:   Q07740
- SMR:   Q07740
- GeneID:   5691399
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3817
- HOGENOM:   HBG751163
- OMA:   WEAPRIE
- ProtClustDB:   CLSK864446
- BioCyc:   ACAU438753:AZC_3817-MONOMER
- GO:   GO:0005737
- GO:   GO:0009877
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 23349; Mature: 23217

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLGQAARITQNQSSIYITFDDGPHPSVTPAVCEILREHSALATFFQIGRFAKEYPSIS
CCCCHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
RQCQLDGHAIGNHTFDHPNLQDRAGEEVEYQISSAQKCLEHICGRGFVRHFRAPYGAWST
CEECCCCEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHH
QILNVVNKIGLRPVSWSVDPRDWEAPRIENLINEILDNARPGSIILLHDGCPPDEAAMWD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEC
VRGGRAQTLAALRYVVPALQARGFALQPLP
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SVLGQAARITQNQSSIYITFDDGPHPSVTPAVCEILREHSALATFFQIGRFAKEYPSIS
CCCHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
RQCQLDGHAIGNHTFDHPNLQDRAGEEVEYQISSAQKCLEHICGRGFVRHFRAPYGAWST
CEECCCCEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHH
QILNVVNKIGLRPVSWSVDPRDWEAPRIENLINEILDNARPGSIILLHDGCPPDEAAMWD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEC
VRGGRAQTLAALRYVVPALQARGFALQPLP
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2615763