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The map label for this gene is ydiF [H]

Identifier: 158425392

GI number: 158425392

Start: 4322375

End: 4323997

Strand: Direct

Name: ydiF [H]

Synonym: AZC_3768

Alternate gene names: 158425392

Gene position: 4322375-4323997 (Clockwise)

Preceding gene: 158425390

Following gene: 158425395

Centisome position: 80.49

GC content: 65.99

Gene sequence:

>1623_bases
ATGATCCGCCTCGACAACATCAGCAAGCAGAACGGCAAGCAGATCGTCTTCATCGAGGCGTCCATGTCCCTGCTGAAGGG
CGAGAAGGTGGGCCTCGTCGGCCCCAACGGCGCCGGCAAGTCCACCCTGTTCCGCCTCATCACCGGCCGTGAACTGCCGG
ATGAAGGCCAGGTCTCCATCGATCGCGGCGTGACCATCGGCTATTTCGACCAGGACGTGGGCGAGATGTCCGGCCGCAGT
GCGCTGGCCGAAGTGATGGACGGCGCCGGCCCGGTGAGCGTGGTGGCGGCCGAGCTGAAGGAACTGGAGGAGGCCCTCGC
CGATCCCGAGCAGGCGGACAATCTGGACGCGCTGGTGGAGCGCTATGGCGAGGTGCAGGGCAGGTTCGAGGAACTGGGCG
GCTACGCGCTGGAGGGCCGGGCGAGCGAAGTGCTGGCCGGCCTCGGCTTCAGCCCGGAGATGATCGACGGCGACGTGGGC
AAACTCTCGGGCGGATGGAAGATGCGCGTGGCGCTCGCCCGCATCCTGCTGATGCGCCCCGACGCCATGCTGCTGGACGA
GCCCTCGAACCATCTCGACATCGAGAGCCTGATCTGGCTGGAGCAGTTCCTGAAGAATTACGAGGGCGCGCTGATGATGA
CATCGCACGATCGCGCCTTCATGAACCGCATCGTCACCAAGGTGGTGGAGATCGACGGCGGCACACTCACCTCCTATTCC
GGCAATTACGAATTCTACGCCGAGCAGCGGGCGCTGGCGGACAAGCAGCAGCAGGCCCAGTTCGAGCGCCAGCAGGCGAT
GCTCGCCAAGGAGATCCAGTTCATCGAGCGCTTCAAGGCCCGCGCCTCCCACGCGGCGCAGGTGCAGAGCCGGGTGAAGA
AGCTGGAGAAGATCGACCGGGTGGAGCCGCCCCGCCGCCGCCAGACGGTGGCCTTCGAATTCCAGACACCGCCTCGCTCG
GGCGAGGACGTGGTCAGCCTCAAGGGCGTGCACAAGGCCTATGGCGCGCGCACCATCTATGAGGGGCTCGATTTCTCCGT
GCGCAGGCGCGAGCGCTGGTGCGTGATGGGGATGAACGGCGCCGGCAAGTCCACCCTGCTCAAGCTCGTGACAGGCTCGA
CGGAACCTGACGCCGGCAGCGTGACCCTCGGCGGCAGCGTGAAGATGGCCTATTTTGCCCAGCACGCCATGGAACTGCTG
GAAGGCGAGCACACGGTGTTCGAGAGCCTGGAAGACAGCTTCCCGCAGGCGGGCCAGGGCTCGCTCCGCGCCCTCGCCGG
CTGCTTCGGCTTCTCGGGCGACGATGTGGAGAAGCGCTGCCGCGTGCTCTCCGGCGGCGAAAAGGCCCGCCTTGTCATGG
CCAAGATGCTGTTCGACCCGCCGAACTTCCTGGTGCTGGACGAGCCCACCAACCATCTCGACATGGCCACCAAGGAGATG
CTGATCGACGCCCTCGCCAATTACGAGGGCACCATGCTGTTCGTCTCGCATGACCGCCACTTCCTCGCGGCCCTGTCGAA
CCGGGTGCTGGAACTCACCCCCGACGGCATCCACCAGTATGGCGGCGGCTATACCGAATACGTGGCCCGCACCGGCCAGG
AAGCGCCCGGCCTGCGGAATTGA

Upstream 100 bases:

>100_bases
GACACACGCTTAACGGGTTGCAGGCGCCTGCGGGCTTTCCTGCCGGCCCCTTATGGCCTAAGTGCGCGGGACCATTCGTT
CCCCCGAGACAAGAAGACCC

Downstream 100 bases:

>100_bases
TGGGAGGCCCGGCGGCATTCGCCGCCGGACGTCCCGCTTCACGTTGCGACCGGCTCGCCCAGCGTGTGCATGAGGCGGTT
GGCCCAGCCAAAGATGGCGG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIRLDNISKQNGKQIVFIEASMSLLKGEKVGLVGPNGAGKSTLFRLITGRELPDEGQVSIDRGVTIGYFDQDVGEMSGRS
ALAEVMDGAGPVSVVAAELKELEEALADPEQADNLDALVERYGEVQGRFEELGGYALEGRASEVLAGLGFSPEMIDGDVG
KLSGGWKMRVALARILLMRPDAMLLDEPSNHLDIESLIWLEQFLKNYEGALMMTSHDRAFMNRIVTKVVEIDGGTLTSYS
GNYEFYAEQRALADKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLEKIDRVEPPRRRQTVAFEFQTPPRS
GEDVVSLKGVHKAYGARTIYEGLDFSVRRRERWCVMGMNGAGKSTLLKLVTGSTEPDAGSVTLGGSVKMAYFAQHAMELL
EGEHTVFESLEDSFPQAGQGSLRALAGCFGFSGDDVEKRCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
LIDALANYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRN

Sequences:

>Translated_540_residues
MIRLDNISKQNGKQIVFIEASMSLLKGEKVGLVGPNGAGKSTLFRLITGRELPDEGQVSIDRGVTIGYFDQDVGEMSGRS
ALAEVMDGAGPVSVVAAELKELEEALADPEQADNLDALVERYGEVQGRFEELGGYALEGRASEVLAGLGFSPEMIDGDVG
KLSGGWKMRVALARILLMRPDAMLLDEPSNHLDIESLIWLEQFLKNYEGALMMTSHDRAFMNRIVTKVVEIDGGTLTSYS
GNYEFYAEQRALADKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLEKIDRVEPPRRRQTVAFEFQTPPRS
GEDVVSLKGVHKAYGARTIYEGLDFSVRRRERWCVMGMNGAGKSTLLKLVTGSTEPDAGSVTLGGSVKMAYFAQHAMELL
EGEHTVFESLEDSFPQAGQGSLRALAGCFGFSGDDVEKRCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
LIDALANYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRN
>Mature_540_residues
MIRLDNISKQNGKQIVFIEASMSLLKGEKVGLVGPNGAGKSTLFRLITGRELPDEGQVSIDRGVTIGYFDQDVGEMSGRS
ALAEVMDGAGPVSVVAAELKELEEALADPEQADNLDALVERYGEVQGRFEELGGYALEGRASEVLAGLGFSPEMIDGDVG
KLSGGWKMRVALARILLMRPDAMLLDEPSNHLDIESLIWLEQFLKNYEGALMMTSHDRAFMNRIVTKVVEIDGGTLTSYS
GNYEFYAEQRALADKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLEKIDRVEPPRRRQTVAFEFQTPPRS
GEDVVSLKGVHKAYGARTIYEGLDFSVRRRERWCVMGMNGAGKSTLLKLVTGSTEPDAGSVTLGGSVKMAYFAQHAMELL
EGEHTVFESLEDSFPQAGQGSLRALAGCFGFSGDDVEKRCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
LIDALANYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRN

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=535, Percent_Identity=33.8317757009346, Blast_Score=302, Evalue=5e-82,
Organism=Homo sapiens, GI27881506, Length=551, Percent_Identity=33.0308529945554, Blast_Score=266, Evalue=4e-71,
Organism=Homo sapiens, GI10947137, Length=536, Percent_Identity=33.2089552238806, Blast_Score=266, Evalue=5e-71,
Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=32.9044117647059, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=32.9044117647059, Blast_Score=236, Evalue=4e-62,
Organism=Escherichia coli, GI1789751, Length=527, Percent_Identity=36.4326375711575, Blast_Score=369, Evalue=1e-103,
Organism=Escherichia coli, GI1787041, Length=537, Percent_Identity=35.0093109869646, Blast_Score=335, Evalue=6e-93,
Organism=Escherichia coli, GI2367384, Length=528, Percent_Identity=34.6590909090909, Blast_Score=289, Evalue=4e-79,
Organism=Escherichia coli, GI1787182, Length=525, Percent_Identity=33.3333333333333, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=28.6995515695067, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=26.8867924528302, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789891, Length=234, Percent_Identity=28.6324786324786, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1789873, Length=232, Percent_Identity=28.0172413793103, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788225, Length=269, Percent_Identity=24.907063197026, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787164, Length=193, Percent_Identity=32.6424870466321, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=23.1527093596059, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI48995001, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=26.0504201680672, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=533, Percent_Identity=33.7711069418386, Blast_Score=284, Evalue=7e-77,
Organism=Caenorhabditis elegans, GI17559834, Length=551, Percent_Identity=30.1270417422868, Blast_Score=279, Evalue=3e-75,
Organism=Caenorhabditis elegans, GI17555318, Length=523, Percent_Identity=31.9311663479924, Blast_Score=266, Evalue=3e-71,
Organism=Caenorhabditis elegans, GI115534520, Length=239, Percent_Identity=28.0334728033473, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=258, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=258, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=258, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6321121, Length=539, Percent_Identity=30.6122448979592, Blast_Score=278, Evalue=2e-75,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=31.9266055045872, Blast_Score=273, Evalue=7e-74,
Organism=Saccharomyces cerevisiae, GI6324314, Length=393, Percent_Identity=27.9898218829517, Blast_Score=136, Evalue=9e-33,
Organism=Saccharomyces cerevisiae, GI6325030, Length=394, Percent_Identity=27.9187817258883, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6323278, Length=393, Percent_Identity=27.4809160305344, Blast_Score=128, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24666836, Length=531, Percent_Identity=33.7099811676083, Blast_Score=301, Evalue=6e-82,
Organism=Drosophila melanogaster, GI24642252, Length=508, Percent_Identity=32.8740157480315, Blast_Score=281, Evalue=8e-76,
Organism=Drosophila melanogaster, GI18859989, Length=508, Percent_Identity=32.8740157480315, Blast_Score=281, Evalue=8e-76,
Organism=Drosophila melanogaster, GI24641342, Length=538, Percent_Identity=29.182156133829, Blast_Score=259, Evalue=4e-69,
Organism=Drosophila melanogaster, GI221500365, Length=164, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007184, Length=164, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59478; Mature: 59478

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLDNISKQNGKQIVFIEASMSLLKGEKVGLVGPNGAGKSTLFRLITGRELPDEGQVSI
CCCCCCCCCCCCCEEEEEECCHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DRGVTIGYFDQDVGEMSGRSALAEVMDGAGPVSVVAAELKELEEALADPEQADNLDALVE
CCCCEEEECCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RYGEVQGRFEELGGYALEGRASEVLAGLGFSPEMIDGDVGKLSGGWKMRVALARILLMRP
HHHHHHHHHHHHCCEEECCCHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCC
DAMLLDEPSNHLDIESLIWLEQFLKNYEGALMMTSHDRAFMNRIVTKVVEIDGGTLTSYS
CCCEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
GNYEFYAEQRALADKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLEKIDR
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VEPPRRRQTVAFEFQTPPRSGEDVVSLKGVHKAYGARTIYEGLDFSVRRRERWCVMGMNG
CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHCCCEEEEECCC
AGKSTLLKLVTGSTEPDAGSVTLGGSVKMAYFAQHAMELLEGEHTVFESLEDSFPQAGQG
CCHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
SLRALAGCFGFSGDDVEKRCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
LIDALANYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRN
HHHHHHCCCCEEEEEECCCHHHHHHHCCEEEECCCHHHHHCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIRLDNISKQNGKQIVFIEASMSLLKGEKVGLVGPNGAGKSTLFRLITGRELPDEGQVSI
CCCCCCCCCCCCCEEEEEECCHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DRGVTIGYFDQDVGEMSGRSALAEVMDGAGPVSVVAAELKELEEALADPEQADNLDALVE
CCCCEEEECCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RYGEVQGRFEELGGYALEGRASEVLAGLGFSPEMIDGDVGKLSGGWKMRVALARILLMRP
HHHHHHHHHHHHCCEEECCCHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCC
DAMLLDEPSNHLDIESLIWLEQFLKNYEGALMMTSHDRAFMNRIVTKVVEIDGGTLTSYS
CCCEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
GNYEFYAEQRALADKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLEKIDR
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VEPPRRRQTVAFEFQTPPRSGEDVVSLKGVHKAYGARTIYEGLDFSVRRRERWCVMGMNG
CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHCCCEEEEECCC
AGKSTLLKLVTGSTEPDAGSVTLGGSVKMAYFAQHAMELLEGEHTVFESLEDSFPQAGQG
CCHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
SLRALAGCFGFSGDDVEKRCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
LIDALANYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRN
HHHHHHCCCCEEEEEECCCHHHHHHHCCEEEECCCHHHHHCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]