| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is bfrD [H]
Identifier: 158425378
GI number: 158425378
Start: 4306781
End: 4309276
Strand: Reverse
Name: bfrD [H]
Synonym: AZC_3754
Alternate gene names: 158425378
Gene position: 4309276-4306781 (Counterclockwise)
Preceding gene: 158425386
Following gene: 158425377
Centisome position: 80.25
GC content: 63.02
Gene sequence:
>2496_bases ATGTCTCAAATGTGGCGCTTCGGTGTCATTTTTCGTTGCGGCAGGGCAAGCGTTGGAAATATGGAGGAGAAATACAGATT GGACATTGCGTGCCCACGTGCGGTGTTGCGCGCATTTCTGGAGATGATTGACATGCCCGCCAATGTTGCTGGTGAAGGTA TTCGCACATCCAGCCAGCCCGAGGGCGTCCGGGCGGCTCTCATGGGATCGCTGCATTTGACCGTCGGCATGGCGTCCGTG ATGGTGGCGGGCCCGGCGCTGGCCCAGCAGGCCGCAGCCCCGAGCACGGAAGTGGACCTGCCCACCGTGCAGGTGCAGGG CGACGGCACCAGCTTCTCGTCGAACAGCACGGGCGTCACCCGCCTGCCGGTGCCGATCTTCGACATGCCGCAGACAGTCA ACGTCATCACCGAGGAGGTGATGCGCGAGCAGAACACGGTGACGCTCGAACAGGCCCTGCGCAACGTCTCGGGCATCACC TTCAGCGCCGGCGAGGGCGGCCAGCAGGGCGACAATCCCATCATCCGGGGCTTCTCGGCGCGCGGCGACATTTATCGCGA CGGCATCCGCGATCCGGGCTGGTACACGCGCGACATGTTCGACATCGAGCAGGTGGACGTGTTCCTCGGCCCGTCGTCCT TCGCCTTCGGCCGCGGTTCCACGGGCGGCGCCATCAACATGGTGTCCAAGCTGCCCAAGAACGCCACCTTCGTGAATGCG GACGTTTCCGCCTACACCAGTCAGGGTTGGCGCACCACGCTCGATGCCAACGGCAAGTATAACGACAACATCTATGCGCG CATCAACCTGATGGCGCAGGACATCGACACCGCCGACCGCGATAACGTCAACGCCACGCGCTGGGGTGTGGCCCCGTCCA TCACCGCCAAGCTGAACGACAAGACGACGGCGACGCTGTCCTATTACTACCAGCACGAGGAGAGCGTTCCCGATTACGGC GTGCCCTATTATCCGGCGCCCGTGGTGAGCACCGCGCTCGGCACCTTCGGCCAGCCGCAGGGCGGATATTTCGGCAATGG TGCGGCGACCCCGCCGGTCAATGTGCCGCGCAACACCTGGTACGGCGTCACCAACGGTCCCTACAAGGATCAGGTGACCA CCGACACCAACATGGTCACCCTGCAGCTCCAGTATGAGCTCAACGACTATGTGACGCTCACCAACGGCACCCGCTACACC GCGAACGATCGTCTGGCCCGCGTGACAGCGCCCCGCGCGCTCGGCACTTCCGGCAACGTGTCCTTCGCCTCGCCGCTGCC GGCTTCCCAGTATTATTACCCGACCAGCGCCATGACGATCGGCATGCAGCGCTTCCAGACCGAGACCGACAATACCCAGT TCACGAACATCACCGACATGGTGGCGAAGTTCAAATGGGGCCAGTTCGAGCACACGCTCAACGCCGGCATCGAGGTCACC AGCGAAGGCCGCTACCAGCAGCGTTATAACCTCTGCAATCAGACGGTGGTGGCCTGCCGCGTGTCGCTGATCAATCCCCT GGACGTGTCCGCGAACTTCGGCCTCGGCGGTTACACCAACTATCTGCCGACCTCCACCGTGACCACGGACATGACGGACG TGGGCTTCTATGCGGCCGACCAGATCAAGATCAACCAGTACTGGCAGATCATGGGCGGCTTCCGGCTCGATGCCGCCAGC ACCAACTACAATTCCTTCGCCATCACGACCTCCGGCTCCAGCATCACCGGCACGCAGACGACGCTCCAGAACTCGGAGAC CATGTTCAACTACAAGGTGGGCACCATCTTCACGCCCATCGAGCCGCTGAACCTCTATGTGACCTACGGCACCTCCTCCA ATCCTTCGTCGGAGTATGGCGTGCTTGACAGCGGTACAGCGACGCTGGCGCCGGAGTCGAACACGACCGCCGAGGCCGGC TTCAAGGCGATGCTGCTCAACAACCAGCTCACCGTGACCGGCGCCATCTTCCAGACCATGAAGACCAACACCCGCGTCGC GACCGACACTGCGGCGGGCCTGCCGCCCACCGTGCTGGGCGGCGAGCAGCGGGTGCAGGGCTATACGCTCGGCGCCACCG GCAACCTCACCAAGGACTGGAACATCACCGCCAGCTTCACCCATCTCGACTCGGAGATCATGAGTGTCGGTCCCGCACCG ACCGTGGCCAACCTCCAGACGCTGGGCAAGCAACTGCCGAACACGCCGCCCAACTCCTTCTCCTTCTGGACGTCCTACAA CGTCACCAAGGAACTCCTGGTCGGCTTCGGCGGCACCTACAACGACAACACCTTCGCCAATGCCACGAACACCGTCTATG TGCCGTCCTACTGGGCCTTCGACGCCATGGCGAGCTACCAGATCTCGAAGAACTTCCAGGTCCAGCTCAACGTCTACAAC CTGACCGACGAGCTGTATTACGCGCAGTATTATGGCGGTCAGGCCGTCCCCGCTGCGGGCCGCACCGGCACCCTCACCGC CCGGGCGACCTTCTGA
Upstream 100 bases:
>100_bases CGCGCCGATGGCGCGCAAGCACCTGCGGATGCTGGCATTGCAGCGTTCTTAGAGTCATTACAGTTTTTATTTATTACAAA CAAATAATGGCCAGATTAGC
Downstream 100 bases:
>100_bases TCCCGGTTCCCGTCTCCGCCGCCGCGCCTCTCACCGGGCGCGGCGGCTTTTGCGTTTGTTGCGCCCTGCGCGGAGTGCCT GCCGATGATGATCCATATTC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]
Number of amino acids: Translated: 831; Mature: 830
Protein sequence:
>831_residues MSQMWRFGVIFRCGRASVGNMEEKYRLDIACPRAVLRAFLEMIDMPANVAGEGIRTSSQPEGVRAALMGSLHLTVGMASV MVAGPALAQQAAAPSTEVDLPTVQVQGDGTSFSSNSTGVTRLPVPIFDMPQTVNVITEEVMREQNTVTLEQALRNVSGIT FSAGEGGQQGDNPIIRGFSARGDIYRDGIRDPGWYTRDMFDIEQVDVFLGPSSFAFGRGSTGGAINMVSKLPKNATFVNA DVSAYTSQGWRTTLDANGKYNDNIYARINLMAQDIDTADRDNVNATRWGVAPSITAKLNDKTTATLSYYYQHEESVPDYG VPYYPAPVVSTALGTFGQPQGGYFGNGAATPPVNVPRNTWYGVTNGPYKDQVTTDTNMVTLQLQYELNDYVTLTNGTRYT ANDRLARVTAPRALGTSGNVSFASPLPASQYYYPTSAMTIGMQRFQTETDNTQFTNITDMVAKFKWGQFEHTLNAGIEVT SEGRYQQRYNLCNQTVVACRVSLINPLDVSANFGLGGYTNYLPTSTVTTDMTDVGFYAADQIKINQYWQIMGGFRLDAAS TNYNSFAITTSGSSITGTQTTLQNSETMFNYKVGTIFTPIEPLNLYVTYGTSSNPSSEYGVLDSGTATLAPESNTTAEAG FKAMLLNNQLTVTGAIFQTMKTNTRVATDTAAGLPPTVLGGEQRVQGYTLGATGNLTKDWNITASFTHLDSEIMSVGPAP TVANLQTLGKQLPNTPPNSFSFWTSYNVTKELLVGFGGTYNDNTFANATNTVYVPSYWAFDAMASYQISKNFQVQLNVYN LTDELYYAQYYGGQAVPAAGRTGTLTARATF
Sequences:
>Translated_831_residues MSQMWRFGVIFRCGRASVGNMEEKYRLDIACPRAVLRAFLEMIDMPANVAGEGIRTSSQPEGVRAALMGSLHLTVGMASV MVAGPALAQQAAAPSTEVDLPTVQVQGDGTSFSSNSTGVTRLPVPIFDMPQTVNVITEEVMREQNTVTLEQALRNVSGIT FSAGEGGQQGDNPIIRGFSARGDIYRDGIRDPGWYTRDMFDIEQVDVFLGPSSFAFGRGSTGGAINMVSKLPKNATFVNA DVSAYTSQGWRTTLDANGKYNDNIYARINLMAQDIDTADRDNVNATRWGVAPSITAKLNDKTTATLSYYYQHEESVPDYG VPYYPAPVVSTALGTFGQPQGGYFGNGAATPPVNVPRNTWYGVTNGPYKDQVTTDTNMVTLQLQYELNDYVTLTNGTRYT ANDRLARVTAPRALGTSGNVSFASPLPASQYYYPTSAMTIGMQRFQTETDNTQFTNITDMVAKFKWGQFEHTLNAGIEVT SEGRYQQRYNLCNQTVVACRVSLINPLDVSANFGLGGYTNYLPTSTVTTDMTDVGFYAADQIKINQYWQIMGGFRLDAAS TNYNSFAITTSGSSITGTQTTLQNSETMFNYKVGTIFTPIEPLNLYVTYGTSSNPSSEYGVLDSGTATLAPESNTTAEAG FKAMLLNNQLTVTGAIFQTMKTNTRVATDTAAGLPPTVLGGEQRVQGYTLGATGNLTKDWNITASFTHLDSEIMSVGPAP TVANLQTLGKQLPNTPPNSFSFWTSYNVTKELLVGFGGTYNDNTFANATNTVYVPSYWAFDAMASYQISKNFQVQLNVYN LTDELYYAQYYGGQAVPAAGRTGTLTARATF >Mature_830_residues SQMWRFGVIFRCGRASVGNMEEKYRLDIACPRAVLRAFLEMIDMPANVAGEGIRTSSQPEGVRAALMGSLHLTVGMASVM VAGPALAQQAAAPSTEVDLPTVQVQGDGTSFSSNSTGVTRLPVPIFDMPQTVNVITEEVMREQNTVTLEQALRNVSGITF SAGEGGQQGDNPIIRGFSARGDIYRDGIRDPGWYTRDMFDIEQVDVFLGPSSFAFGRGSTGGAINMVSKLPKNATFVNAD VSAYTSQGWRTTLDANGKYNDNIYARINLMAQDIDTADRDNVNATRWGVAPSITAKLNDKTTATLSYYYQHEESVPDYGV PYYPAPVVSTALGTFGQPQGGYFGNGAATPPVNVPRNTWYGVTNGPYKDQVTTDTNMVTLQLQYELNDYVTLTNGTRYTA NDRLARVTAPRALGTSGNVSFASPLPASQYYYPTSAMTIGMQRFQTETDNTQFTNITDMVAKFKWGQFEHTLNAGIEVTS EGRYQQRYNLCNQTVVACRVSLINPLDVSANFGLGGYTNYLPTSTVTTDMTDVGFYAADQIKINQYWQIMGGFRLDAAST NYNSFAITTSGSSITGTQTTLQNSETMFNYKVGTIFTPIEPLNLYVTYGTSSNPSSEYGVLDSGTATLAPESNTTAEAGF KAMLLNNQLTVTGAIFQTMKTNTRVATDTAAGLPPTVLGGEQRVQGYTLGATGNLTKDWNITASFTHLDSEIMSVGPAPT VANLQTLGKQLPNTPPNSFSFWTSYNVTKELLVGFGGTYNDNTFANATNTVYVPSYWAFDAMASYQISKNFQVQLNVYNL TDELYYAQYYGGQAVPAAGRTGTLTARATF
Specific function: Probably involved in iron transport [H]
COG id: COG4774
COG function: function code P; Outer membrane receptor for monomeric catechols
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=794, Percent_Identity=29.5969773299748, Blast_Score=260, Evalue=3e-70, Organism=Escherichia coli, GI1786344, Length=778, Percent_Identity=23.1362467866324, Blast_Score=147, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90184; Mature: 90053
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQMWRFGVIFRCGRASVGNMEEKYRLDIACPRAVLRAFLEMIDMPANVAGEGIRTSSQP CCCCEEEEEEEEECCCCCCCCCHHEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCC EGVRAALMGSLHLTVGMASVMVAGPALAQQAAAPSTEVDLPTVQVQGDGTSFSSNSTGVT CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEE RLPVPIFDMPQTVNVITEEVMREQNTVTLEQALRNVSGITFSAGEGGQQGDNPIIRGFSA ECCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHCCCCEEECCCCCCCCCCCEEEEECC RGDIYRDGIRDPGWYTRDMFDIEQVDVFLGPSSFAFGRGSTGGAINMVSKLPKNATFVNA CCCHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC DVSAYTSQGWRTTLDANGKYNDNIYARINLMAQDIDTADRDNVNATRWGVAPSITAKLND CHHHEECCCCEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEECC KTTATLSYYYQHEESVPDYGVPYYPAPVVSTALGTFGQPQGGYFGNGAATPPVNVPRNTW CEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE YGVTNGPYKDQVTTDTNMVTLQLQYELNDYVTLTNGTRYTANDRLARVTAPRALGTSGNV ECCCCCCCCCCEECCCCEEEEEEEEECCCEEEEECCEEEECCCCEEEEECCCCCCCCCCE SFASPLPASQYYYPTSAMTIGMQRFQTETDNTQFTNITDMVAKFKWGQFEHTLNAGIEVT EECCCCCCCCEECCCHHHHHHHHHHCCCCCCCEECCHHHHHHHCCCCCCHHHHCCCEEEE SEGRYQQRYNLCNQTVVACRVSLINPLDVSANFGLGGYTNYLPTSTVTTDMTDVGFYAAD CCCCHHHHHHHHHHHEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCHHCCEEEEC QIKINQYWQIMGGFRLDAASTNYNSFAITTSGSSITGTQTTLQNSETMFNYKVGTIFTPI EEEECHHHEECCCEEEEECCCCCCEEEEEECCCEECCCHHHHCCCCEEEEEEECEEECCC EPLNLYVTYGTSSNPSSEYGVLDSGTATLAPESNTTAEAGFKAMLLNNQLTVTGAIFQTM CCEEEEEEECCCCCCCCCCCEEECCCEEECCCCCCCHHCCEEEEEECCCEEEEHHHHHHH KTNTRVATDTAAGLPPTVLGGEQRVQGYTLGATGNLTKDWNITASFTHLDSEIMSVGPAP CCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHHHHCCCCC TVANLQTLGKQLPNTPPNSFSFWTSYNVTKELLVGFGGTYNDNTFANATNTVYVPSYWAF CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHH DAMASYQISKNFQVQLNVYNLTDELYYAQYYGGQAVPAAGRTGTLTARATF HHHHEEEECCCEEEEEEEEECCCCEEEEECCCCEECCCCCCCCEEEEEECC >Mature Secondary Structure SQMWRFGVIFRCGRASVGNMEEKYRLDIACPRAVLRAFLEMIDMPANVAGEGIRTSSQP CCCEEEEEEEEECCCCCCCCCHHEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCC EGVRAALMGSLHLTVGMASVMVAGPALAQQAAAPSTEVDLPTVQVQGDGTSFSSNSTGVT CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEE RLPVPIFDMPQTVNVITEEVMREQNTVTLEQALRNVSGITFSAGEGGQQGDNPIIRGFSA ECCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHCCCCEEECCCCCCCCCCCEEEEECC RGDIYRDGIRDPGWYTRDMFDIEQVDVFLGPSSFAFGRGSTGGAINMVSKLPKNATFVNA CCCHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC DVSAYTSQGWRTTLDANGKYNDNIYARINLMAQDIDTADRDNVNATRWGVAPSITAKLND CHHHEECCCCEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEECC KTTATLSYYYQHEESVPDYGVPYYPAPVVSTALGTFGQPQGGYFGNGAATPPVNVPRNTW CEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE YGVTNGPYKDQVTTDTNMVTLQLQYELNDYVTLTNGTRYTANDRLARVTAPRALGTSGNV ECCCCCCCCCCEECCCCEEEEEEEEECCCEEEEECCEEEECCCCEEEEECCCCCCCCCCE SFASPLPASQYYYPTSAMTIGMQRFQTETDNTQFTNITDMVAKFKWGQFEHTLNAGIEVT EECCCCCCCCEECCCHHHHHHHHHHCCCCCCCEECCHHHHHHHCCCCCCHHHHCCCEEEE SEGRYQQRYNLCNQTVVACRVSLINPLDVSANFGLGGYTNYLPTSTVTTDMTDVGFYAAD CCCCHHHHHHHHHHHEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCHHCCEEEEC QIKINQYWQIMGGFRLDAASTNYNSFAITTSGSSITGTQTTLQNSETMFNYKVGTIFTPI EEEECHHHEECCCEEEEECCCCCCEEEEEECCCEECCCHHHHCCCCEEEEEEECEEECCC EPLNLYVTYGTSSNPSSEYGVLDSGTATLAPESNTTAEAGFKAMLLNNQLTVTGAIFQTM CCEEEEEEECCCCCCCCCCCEEECCCEEECCCCCCCHHCCEEEEEECCCEEEEHHHHHHH KTNTRVATDTAAGLPPTVLGGEQRVQGYTLGATGNLTKDWNITASFTHLDSEIMSVGPAP CCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHHHHCCCCC TVANLQTLGKQLPNTPPNSFSFWTSYNVTKELLVGFGGTYNDNTFANATNTVYVPSYWAF CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHH DAMASYQISKNFQVQLNVYNLTDELYYAQYYGGQAVPAAGRTGTLTARATF HHHHEEEECCCEEEEEEEEECCCCEEEEECCCCEECCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12910271; 10079522 [H]