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The map label for this gene is ompW [C]

Identifier: 158425366

GI number: 158425366

Start: 4294738

End: 4295466

Strand: Direct

Name: ompW [C]

Synonym: AZC_3742

Alternate gene names: 158425366

Gene position: 4294738-4295466 (Clockwise)

Preceding gene: 158425364

Following gene: 158425367

Centisome position: 79.98

GC content: 65.29

Gene sequence:

>729_bases
GTGCTGGAGATGGGGCAAATGGCTGGTTTCATCAAGTCTTTCGGCAGCAAGCTCGCAGGCGCCACGGCGCTGGCCGGCGT
TGCCGCGATCGCTTTCTCGACCCTCGGTGCGGCGCCCGCCGCGGCGGCCGACATGGCCATGCCGGTGAAGGCCGCCCCCG
TGGTGGTGGACACCTGGAACCCCTGGCAGATCCGCCTGCGCATCACGGGCGTCGTCACCAATGACAGCGGCCATGTGAAC
GGCGTCGCCGGCTCCGGCATCTCGACCTCGGACACGGTGATCCCCGAGCTCGACATCTCCTACTACTTCACGAAGAACTG
GGCGGCCGAACTCATCCTCGGCACCACCTACAGCTACATCGACGGCACCGGCAGCCTGAACGGCACCGCTGTCGGCAAGA
CCTGGCTGCTGCCCCCCACCCTGCTGCTGCAGTATCACTTCACCGACTTCGGCGCCTTCCAGCCCTACGTCGGCGCCGGC
GTGAACTACACCATCTTCTACAACCAGAGCGCCAATCAGGTGACGTCCATCGACGTGAAGAACACCTGGGGCTGGGCGCT
GCAGGCCGGCTTCGACTACATGATCGACCGGCACTGGGGCTGGAACGTGGACGTGAAGAAGATCTTCCTCGAGCCCGACT
TCAACGTCACCGTCGGCCGCACGCCGCTCACCGGCTCCACCAACCTGAGCCCCTGGCTGCTCAGCACCGGTGTGACCTAT
CGCTTCTGA

Upstream 100 bases:

>100_bases
CTGTTGCAAGATGGCAACAGCGTCAGGCAGGGGGACTTGGATTTGATCTAGGTCAAACTTTGCCGCCCGCGATGGGGCAA
GTGTCGCGCATCAGATTCTT

Downstream 100 bases:

>100_bases
TCCGAACGGATCACTGCACCTTACTCTTCCACAGCGCGGGGCCTGCCCCGCGCTGTTTGTTTTTGTCCATGCGCACATTG
CATGGCTGCCAAGATGCCTC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLEMGQMAGFIKSFGSKLAGATALAGVAAIAFSTLGAAPAAAADMAMPVKAAPVVVDTWNPWQIRLRITGVVTNDSGHVN
GVAGSGISTSDTVIPELDISYYFTKNWAAELILGTTYSYIDGTGSLNGTAVGKTWLLPPTLLLQYHFTDFGAFQPYVGAG
VNYTIFYNQSANQVTSIDVKNTWGWALQAGFDYMIDRHWGWNVDVKKIFLEPDFNVTVGRTPLTGSTNLSPWLLSTGVTY
RF

Sequences:

>Translated_242_residues
MLEMGQMAGFIKSFGSKLAGATALAGVAAIAFSTLGAAPAAAADMAMPVKAAPVVVDTWNPWQIRLRITGVVTNDSGHVN
GVAGSGISTSDTVIPELDISYYFTKNWAAELILGTTYSYIDGTGSLNGTAVGKTWLLPPTLLLQYHFTDFGAFQPYVGAG
VNYTIFYNQSANQVTSIDVKNTWGWALQAGFDYMIDRHWGWNVDVKKIFLEPDFNVTVGRTPLTGSTNLSPWLLSTGVTY
RF
>Mature_242_residues
MLEMGQMAGFIKSFGSKLAGATALAGVAAIAFSTLGAAPAAAADMAMPVKAAPVVVDTWNPWQIRLRITGVVTNDSGHVN
GVAGSGISTSDTVIPELDISYYFTKNWAAELILGTTYSYIDGTGSLNGTAVGKTWLLPPTLLLQYHFTDFGAFQPYVGAG
VNYTIFYNQSANQVTSIDVKNTWGWALQAGFDYMIDRHWGWNVDVKKIFLEPDFNVTVGRTPLTGSTNLSPWLLSTGVTY
RF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=164, Percent_Identity=32.9268292682927, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 26053; Mature: 26053

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEMGQMAGFIKSFGSKLAGATALAGVAAIAFSTLGAAPAAAADMAMPVKAAPVVVDTWN
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEECCC
PWQIRLRITGVVTNDSGHVNGVAGSGISTSDTVIPELDISYYFTKNWAAELILGTTYSYI
CEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEECEEEEEECCCEEEEEEECEEEEE
DGTGSLNGTAVGKTWLLPPTLLLQYHFTDFGAFQPYVGAGVNYTIFYNQSANQVTSIDVK
CCCCCCCCEEECEEEECCHHHEEEEECCCCCCCCCHHCCCCEEEEEECCCCCEEEEEEEC
NTWGWALQAGFDYMIDRHWGWNVDVKKIFLEPDFNVTVGRTPLTGSTNLSPWLLSTGVTY
CCCCEEEECCCEEEEECCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCEEEECCEEE
RF
EC
>Mature Secondary Structure
MLEMGQMAGFIKSFGSKLAGATALAGVAAIAFSTLGAAPAAAADMAMPVKAAPVVVDTWN
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEECCC
PWQIRLRITGVVTNDSGHVNGVAGSGISTSDTVIPELDISYYFTKNWAAELILGTTYSYI
CEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEECEEEEEECCCEEEEEEECEEEEE
DGTGSLNGTAVGKTWLLPPTLLLQYHFTDFGAFQPYVGAGVNYTIFYNQSANQVTSIDVK
CCCCCCCCEEECEEEECCHHHEEEEECCCCCCCCCHHCCCCEEEEEECCCCCEEEEEEEC
NTWGWALQAGFDYMIDRHWGWNVDVKKIFLEPDFNVTVGRTPLTGSTNLSPWLLSTGVTY
CCCCEEEECCCEEEEECCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCEEEECCEEE
RF
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]