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The map label for this gene is yedQ [H]

Identifier: 158425346

GI number: 158425346

Start: 4272604

End: 4273704

Strand: Direct

Name: yedQ [H]

Synonym: AZC_3722

Alternate gene names: 158425346

Gene position: 4272604-4273704 (Clockwise)

Preceding gene: 158425338

Following gene: 158425348

Centisome position: 79.57

GC content: 67.39

Gene sequence:

>1101_bases
ATGATATCAATACCGTCCGATTCACGGAGAAAGTGCAGCCGGGCCATGCTGCGGAAGACCGACAGGCGGGCGCCCCTGGA
AGCGCTGAACGGGCTGAAGCGACTGGTCCTCACCATTTCGATGGTCGCGGCCCTTTTGTGCGGCGCGCTGGTGATCGGCG
CCACGCTGCTGGGGCGCACGCCCATCAAGCCGCCGCATCTCTATGACAACATCATCTTTCTGTGCCTGACCATTGGCCTG
TTCATCCTCCTGCGGCGGCGCCCCAAGGCCTTCAGGCCCATCGGTGTGGTCTATCTGGTGGCGGGCTTCATCCTCTACGC
GCGGGCGCTGTTCCTCGTGCCCGAGGACGAGATGCGGGCGTTCTGGACCCTGGCATTGACCGGCACCGGCTTCCTGGTGC
TGGGGCCGGTGTTCGGCTGGTTTTCCGTCGCCTGCGCTTTGGTGATGGTGTGGGCAGCGGCCATGACCGGGGCGCTCGCG
GTCTCACTGTTCGCCATGTCCACCTACTGCTTCTGCATCGTCATGACCTCCGCCATGTTCCATGCCTACAACCGGCATGC
GGAACTGGCGCTGCACAATATCGAGGCCGCCAATGCGGCCCTGAGGGACGCCACGCGCCACGACACGCTGACCGGCCTGC
TGAACCTGCCGGCGCTGCGCGATGCGGCCGCCGGACTGGCGGGCGGCCATGGCGAGAGTGCCCCGCTGGCCCTCGCCTTC
ATCGACGTGGATCACTTCAAGGCGATCAACGACCGCTTCGGCCATGCCGCAGGCGACAGCGTGCTGCAAACGGTGGCGCA
TGCGATCAGCGGAGCGGCGCGCCCGCAGGATCTGGTGGCGCGCATCGGTGGCGAGGAGTTCGCCATCATCATGCCCGGCC
AGGATCTGGCCCATGCGACCGCGGCCGCCGACAAGGTGCGCCTTGCGGTGGCCGAGCGCCCTGTCACCGTGGGCAAGGAG
ACCCTGCGGGTGACCATCTCGGTCGGCGTGACGGCCTGCCAGCCGCCCCACCAGGCGCTCGACTGGATGCTCCAGCGCGC
CGACATGGCCATGTATGCGGCCAAGGCGGATGGCCGCAATCGCGTGCGCGCCACCGCCTGA

Upstream 100 bases:

>100_bases
CCCTGTCTCTGTTTCCGCAACGCAACGTGGCGCAGCACCCTGTGCGCTCCGGGACTTAACCGCACGCTGGAGCGAGGACC
GCCTTGCGCACCCGGCCGCC

Downstream 100 bases:

>100_bases
GCCGACCGGCGCCTCATGCGCCGGTCCCCTCTGCCGACCCCGTGCACCGTCCGTGGCGGGCGGCGGCGCAGGGGACCGCA
CCACTCACATGGCAGGCAGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MISIPSDSRRKCSRAMLRKTDRRAPLEALNGLKRLVLTISMVAALLCGALVIGATLLGRTPIKPPHLYDNIIFLCLTIGL
FILLRRRPKAFRPIGVVYLVAGFILYARALFLVPEDEMRAFWTLALTGTGFLVLGPVFGWFSVACALVMVWAAAMTGALA
VSLFAMSTYCFCIVMTSAMFHAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAGGHGESAPLALAF
IDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFAIIMPGQDLAHATAAADKVRLAVAERPVTVGKE
TLRVTISVGVTACQPPHQALDWMLQRADMAMYAAKADGRNRVRATA

Sequences:

>Translated_366_residues
MISIPSDSRRKCSRAMLRKTDRRAPLEALNGLKRLVLTISMVAALLCGALVIGATLLGRTPIKPPHLYDNIIFLCLTIGL
FILLRRRPKAFRPIGVVYLVAGFILYARALFLVPEDEMRAFWTLALTGTGFLVLGPVFGWFSVACALVMVWAAAMTGALA
VSLFAMSTYCFCIVMTSAMFHAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAGGHGESAPLALAF
IDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFAIIMPGQDLAHATAAADKVRLAVAERPVTVGKE
TLRVTISVGVTACQPPHQALDWMLQRADMAMYAAKADGRNRVRATA
>Mature_366_residues
MISIPSDSRRKCSRAMLRKTDRRAPLEALNGLKRLVLTISMVAALLCGALVIGATLLGRTPIKPPHLYDNIIFLCLTIGL
FILLRRRPKAFRPIGVVYLVAGFILYARALFLVPEDEMRAFWTLALTGTGFLVLGPVFGWFSVACALVMVWAAAMTGALA
VSLFAMSTYCFCIVMTSAMFHAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAGGHGESAPLALAF
IDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFAIIMPGQDLAHATAAADKVRLAVAERPVTVGKE
TLRVTISVGVTACQPPHQALDWMLQRADMAMYAAKADGRNRVRATA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=231, Percent_Identity=36.7965367965368, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=34.1463414634146, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=38.0952380952381, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787802, Length=134, Percent_Identity=36.5671641791045, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=34.7058823529412, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=35.8974358974359, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=35.1648351648352, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1786584, Length=130, Percent_Identity=38.4615384615385, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=31.7073170731707, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=189, Percent_Identity=28.042328042328, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=28.6549707602339, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 39306; Mature: 39306

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIPSDSRRKCSRAMLRKTDRRAPLEALNGLKRLVLTISMVAALLCGALVIGATLLGRT
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIKPPHLYDNIIFLCLTIGLFILLRRRPKAFRPIGVVYLVAGFILYARALFLVPEDEMRA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FWTLALTGTGFLVLGPVFGWFSVACALVMVWAAAMTGALAVSLFAMSTYCFCIVMTSAMF
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAGGHGESAPLALAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEE
IDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFAIIMPGQDLAHAT
EEHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCHHHHHH
AAADKVRLAVAERPVTVGKETLRVTISVGVTACQPPHQALDWMLQRADMAMYAAKADGRN
HHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
RVRATA
CCCCCC
>Mature Secondary Structure
MISIPSDSRRKCSRAMLRKTDRRAPLEALNGLKRLVLTISMVAALLCGALVIGATLLGRT
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIKPPHLYDNIIFLCLTIGLFILLRRRPKAFRPIGVVYLVAGFILYARALFLVPEDEMRA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FWTLALTGTGFLVLGPVFGWFSVACALVMVWAAAMTGALAVSLFAMSTYCFCIVMTSAMF
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAGGHGESAPLALAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEE
IDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFAIIMPGQDLAHAT
EEHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCHHHHHH
AAADKVRLAVAERPVTVGKETLRVTISVGVTACQPPHQALDWMLQRADMAMYAAKADGRN
HHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
RVRATA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]