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The map label for this gene is ligT [C]

Identifier: 158425336

GI number: 158425336

Start: 4258507

End: 4259037

Strand: Direct

Name: ligT [C]

Synonym: AZC_3712

Alternate gene names: 158425336

Gene position: 4258507-4259037 (Clockwise)

Preceding gene: 158425335

Following gene: 158425337

Centisome position: 79.31

GC content: 67.23

Gene sequence:

>531_bases
ATGCCTCGGCTATTCACCGCGATTGAGGTTCCCGGCGAGGTGGGCGCCACGCTCACCATGCTGCGCGGCGGCATATCGGG
TGCCCGCTGGATCGATCCCGAGAATTATCACGTCACCCTGCGCTTCGTCGGCGACGTGGACGACGCCATGGCCCGCGACA
TCGCCCTCATGCTGGGGCAGGTGCGGCGGCGGGCTTTCGATCTGGTGCTCGACGGCCTTGACCAGTTCGGCGGCCACAAG
CCGCGCACCGTTTTCGCGAGCGTAAAGACCAGCACGGCCCTGATGGAACTCCAGGCCGAGCATGAGCGCATCATGCAGCG
CCTCGGCCTTGCGGCGGAACGCACGTATCGCCCGCACGTGACGCTCGCCCGCCTGCGCGACGCCTCCACCCGGCAGGTGG
CAGACTATCTCGCCACCCGCGGGCTCTATCGCAGCGTTCCCTTTCACGTGCCGCGGTTCGTGCTCTACTCCTCCCGTGAC
AGCGTGGGGGGCGGCCCCTACATCGTGGAAGCGGAATATCCGCTGCACTGA

Upstream 100 bases:

>100_bases
CTCGTGGTGGACATTCTCGTTCCGGTGCGGTGAGGCCGCGCTTCCCTCGGGGGCGCGAATCTCATTCACTGTCGGCCATG
TAATATCCGCGGAGGGTCCG

Downstream 100 bases:

>100_bases
CCGCTCACGCGCTTCGTGAGCGGAGCGGACGCAGCGTCATCCTTTCCCAGGTCGGCAAACGCCTGTAGAGCGGATCATAA
GCGTGGCATAAAGCCGCCCC

Product: 2',5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; ABC Transporter; ABC Transporter Permease; 2 5 RNA Ligase

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MPRLFTAIEVPGEVGATLTMLRGGISGARWIDPENYHVTLRFVGDVDDAMARDIALMLGQVRRRAFDLVLDGLDQFGGHK
PRTVFASVKTSTALMELQAEHERIMQRLGLAAERTYRPHVTLARLRDASTRQVADYLATRGLYRSVPFHVPRFVLYSSRD
SVGGGPYIVEAEYPLH

Sequences:

>Translated_176_residues
MPRLFTAIEVPGEVGATLTMLRGGISGARWIDPENYHVTLRFVGDVDDAMARDIALMLGQVRRRAFDLVLDGLDQFGGHK
PRTVFASVKTSTALMELQAEHERIMQRLGLAAERTYRPHVTLARLRDASTRQVADYLATRGLYRSVPFHVPRFVLYSSRD
SVGGGPYIVEAEYPLH
>Mature_175_residues
PRLFTAIEVPGEVGATLTMLRGGISGARWIDPENYHVTLRFVGDVDDAMARDIALMLGQVRRRAFDLVLDGLDQFGGHKP
RTVFASVKTSTALMELQAEHERIMQRLGLAAERTYRPHVTLARLRDASTRQVADYLATRGLYRSVPFHVPRFVLYSSRDS
VGGGPYIVEAEYPLH

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 19712; Mature: 19581

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLFTAIEVPGEVGATLTMLRGGISGARWIDPENYHVTLRFVGDVDDAMARDIALMLGQ
CCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
VRRRAFDLVLDGLDQFGGHKPRTVFASVKTSTALMELQAEHERIMQRLGLAAERTYRPHV
HHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
TLARLRDASTRQVADYLATRGLYRSVPFHVPRFVLYSSRDSVGGGPYIVEAEYPLH
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEECCCCC
>Mature Secondary Structure 
PRLFTAIEVPGEVGATLTMLRGGISGARWIDPENYHVTLRFVGDVDDAMARDIALMLGQ
CCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
VRRRAFDLVLDGLDQFGGHKPRTVFASVKTSTALMELQAEHERIMQRLGLAAERTYRPHV
HHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
TLARLRDASTRQVADYLATRGLYRSVPFHVPRFVLYSSRDSVGGGPYIVEAEYPLH
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA