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The map label for this gene is hlyD [H]

Identifier: 158425313

GI number: 158425313

Start: 4235074

End: 4236273

Strand: Direct

Name: hlyD [H]

Synonym: AZC_3689

Alternate gene names: 158425313

Gene position: 4235074-4236273 (Clockwise)

Preceding gene: 158425312

Following gene: 158425314

Centisome position: 78.87

GC content: 71.92

Gene sequence:

>1200_bases
ATGTCCGCCCGTCCGGCGCCTGTCCGCTTCCGCCTGCTCGCCGCGCTCACCGTCCTGAGCTTTGCGTCGGGACCGTTCGC
ACCAGCCCAGGCGGCGGCGCCGCAGGCCAAGGGCCTGACCATCAGCGTGGTGCGCCCCGAGAAGCAGGAACTGCACGATA
CCCTGCTCGTCACCGGCTCCCTGCTGCCGCGCGAGGAAATCCAGGTGGGGCCGGAAATCGAGGGCTACCGCCTCACCGAA
ATCCTCGCCGAGGTGGGGGACACGGTCCAGAAGGGGCAGGTGCTCGCCCGCCTGTCCCGTGACGTGCTCGACACCCAGCT
CGCGCAGAACACCGCCAATGCCGCGAAGGCCAAGGCCACCATCGCCCAGCAGCGCGCGGCGCTCGATCAGGCGCTGGCGC
AGGAGACGGAAGCCAATTCCGCCGCCGAGCGTACCCGCCAGTTGCGCAAGACCGGCGTCTCCACGCAGGAGACCCTGGAC
GAGCGTGAGCGCGCCGTGAAGGTCACCGCCGCGCAGGTGGTCGCCGCCCGGGAGAGCCTCAAAGCCGCCGAGGCCGATGC
CGTGCTGGTGCAGGCCCAGCGGGCCGAACTGGAGCTGAAGCTCCAGCGCACCGAGGTGCGGGCTCCGGAAGCCGGGCTCA
TCCTCGCCCGCGACGCCCGCATCGGCGCCATCGCCTTGTCCACCCGCAGCGAGCCGCTGTTCCGCATCGCCAAGGACGGC
GCCATCGACCTCGACGCGGAAGTGCCCGAGGTCGCCCTGCCCCGCCTCGCGGTCGGCCAGACCGTCGCCGTGACGCCGGC
CGGCTTCAACCGGTCGGTGGAGGGCAAGGTGCGCCTCATCTCGGCGGAAGTGGACAAGGCGACCCGTCTCGGCCGCGCCA
AGATCGCCCTGCCCACCCAGCCCGACCTGCGGCCGGGCGCCTTCGCCCGCGGCGTGGTGCTGCTGGACCGCCGCTGGGGC
CTTTCTGTGCCGCAGTCCGCGGTCATGTTCGACGCCAACGGCGCCTACATCCTCGTTGTGAAGGACGGCGTCATCCATGA
ACGCCGCGTGCACACGGGCATCAAGACCGGCGGGCGCGTGGAGCTCATCGACGGCGCCCAGCCGGACGATCTCGTCGTGG
CGCGTGCGGCCGGTTTCCTGCGCGAAGGCGACAGGGTCACGCCGGCCGAGGCCGGCAAGAGCGTGAGCGAGGCCCGCTGA

Upstream 100 bases:

>100_bases
CGCCGCGCGGGACGGATGTGCCATGAGCCCTCGTCCCGCCACCATTGCCGCGCGCACTGTGCGCAACCTCCGGTTCATCC
GTTCCTTCGGAGACGCTTCC

Downstream 100 bases:

>100_bases
TGGCTCTCAACGTCTCAGCCTGGGCGATCCGCAAGCCCATTCCGTCCCTCGTCCTGTTCGTCGTGCTGACGGCGCTGGGA
CTGGTGCATTTCCGCTCCCT

Product: hemolysin D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MSARPAPVRFRLLAALTVLSFASGPFAPAQAAAPQAKGLTISVVRPEKQELHDTLLVTGSLLPREEIQVGPEIEGYRLTE
ILAEVGDTVQKGQVLARLSRDVLDTQLAQNTANAAKAKATIAQQRAALDQALAQETEANSAAERTRQLRKTGVSTQETLD
ERERAVKVTAAQVVAARESLKAAEADAVLVQAQRAELELKLQRTEVRAPEAGLILARDARIGAIALSTRSEPLFRIAKDG
AIDLDAEVPEVALPRLAVGQTVAVTPAGFNRSVEGKVRLISAEVDKATRLGRAKIALPTQPDLRPGAFARGVVLLDRRWG
LSVPQSAVMFDANGAYILVVKDGVIHERRVHTGIKTGGRVELIDGAQPDDLVVARAAGFLREGDRVTPAEAGKSVSEAR

Sequences:

>Translated_399_residues
MSARPAPVRFRLLAALTVLSFASGPFAPAQAAAPQAKGLTISVVRPEKQELHDTLLVTGSLLPREEIQVGPEIEGYRLTE
ILAEVGDTVQKGQVLARLSRDVLDTQLAQNTANAAKAKATIAQQRAALDQALAQETEANSAAERTRQLRKTGVSTQETLD
ERERAVKVTAAQVVAARESLKAAEADAVLVQAQRAELELKLQRTEVRAPEAGLILARDARIGAIALSTRSEPLFRIAKDG
AIDLDAEVPEVALPRLAVGQTVAVTPAGFNRSVEGKVRLISAEVDKATRLGRAKIALPTQPDLRPGAFARGVVLLDRRWG
LSVPQSAVMFDANGAYILVVKDGVIHERRVHTGIKTGGRVELIDGAQPDDLVVARAAGFLREGDRVTPAEAGKSVSEAR
>Mature_398_residues
SARPAPVRFRLLAALTVLSFASGPFAPAQAAAPQAKGLTISVVRPEKQELHDTLLVTGSLLPREEIQVGPEIEGYRLTEI
LAEVGDTVQKGQVLARLSRDVLDTQLAQNTANAAKAKATIAQQRAALDQALAQETEANSAAERTRQLRKTGVSTQETLDE
RERAVKVTAAQVVAARESLKAAEADAVLVQAQRAELELKLQRTEVRAPEAGLILARDARIGAIALSTRSEPLFRIAKDGA
IDLDAEVPEVALPRLAVGQTVAVTPAGFNRSVEGKVRLISAEVDKATRLGRAKIALPTQPDLRPGAFARGVVLLDRRWGL
SVPQSAVMFDANGAYILVVKDGVIHERRVHTGIKTGGRVELIDGAQPDDLVVARAAGFLREGDRVTPAEAGKSVSEAR

Specific function: Involved in the production of Medicago-specific nodulation signal molecule [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 42530; Mature: 42399

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARPAPVRFRLLAALTVLSFASGPFAPAQAAAPQAKGLTISVVRPEKQELHDTLLVTGS
CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHEEECC
LLPREEIQVGPEIEGYRLTEILAEVGDTVQKGQVLARLSRDVLDTQLAQNTANAAKAKAT
CCCHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAQQRAALDQALAQETEANSAAERTRQLRKTGVSTQETLDERERAVKVTAAQVVAARESL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KAAEADAVLVQAQRAELELKLQRTEVRAPEAGLILARDARIGAIALSTRSEPLFRIAKDG
HHHCCCCEEEEECCCCEEEEEEHHHCCCCCCCEEEEECCCEEEEEEECCCCCHHEEECCC
AIDLDAEVPEVALPRLAVGQTVAVTPAGFNRSVEGKVRLISAEVDKATRLGRAKIALPTQ
CEECCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEHHHHHHHCCCEEEECCCC
PDLRPGAFARGVVLLDRRWGLSVPQSAVMFDANGAYILVVKDGVIHERRVHTGIKTGGRV
CCCCCCCHHCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCEE
ELIDGAQPDDLVVARAAGFLREGDRVTPAEAGKSVSEAR
EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHCCC
>Mature Secondary Structure 
SARPAPVRFRLLAALTVLSFASGPFAPAQAAAPQAKGLTISVVRPEKQELHDTLLVTGS
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHEEECC
LLPREEIQVGPEIEGYRLTEILAEVGDTVQKGQVLARLSRDVLDTQLAQNTANAAKAKAT
CCCHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAQQRAALDQALAQETEANSAAERTRQLRKTGVSTQETLDERERAVKVTAAQVVAARESL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KAAEADAVLVQAQRAELELKLQRTEVRAPEAGLILARDARIGAIALSTRSEPLFRIAKDG
HHHCCCCEEEEECCCCEEEEEEHHHCCCCCCCEEEEECCCEEEEEEECCCCCHHEEECCC
AIDLDAEVPEVALPRLAVGQTVAVTPAGFNRSVEGKVRLISAEVDKATRLGRAKIALPTQ
CEECCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEHHHHHHHCCCEEEECCCC
PDLRPGAFARGVVLLDRRWGLSVPQSAVMFDANGAYILVVKDGVIHERRVHTGIKTGGRV
CCCCCCCHHCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCEE
ELIDGAQPDDLVVARAAGFLREGDRVTPAEAGKSVSEAR
EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1909418; 11481432 [H]