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The map label for this gene is ddpA [H]

Identifier: 158425270

GI number: 158425270

Start: 4184822

End: 4186462

Strand: Direct

Name: ddpA [H]

Synonym: AZC_3646

Alternate gene names: 158425270

Gene position: 4184822-4186462 (Clockwise)

Preceding gene: 158425269

Following gene: 158425273

Centisome position: 77.93

GC content: 64.05

Gene sequence:

>1641_bases
GTGCCGCCGAGGAGGAACAGGATGCCGTTTGAACTGCCGCTCGACCGCCGCACGCTGCTGAAGGGTTCCGGAACTTTGGG
CCTGTCGCTGCTTCTGGGCGGCACCGCTTCCGCGCAGGCCCGCAACGAGACCCTGCTGGTGGTGCAGGAGCTTGGCCCCA
ACAGCCTCGACATGCATGGCGTCGGCTCCAACCAGACCGTCAACGGCCTTTCCTGGAACACGTACGACCGCCTGCTCACT
TATGCCCCCAAGACGCTGCCCGACGGCACGCTCTCCTATGACCGGGCGACGCTGGCGCCGGAGCTGGCGGAGCGCTGGGA
AGAGGCGGCGGACGGCATGTCCTGCACCTTCCACCTGCGCAAGGACGCCGTCTTTCATGACGGCACGCCCGTCACCGCCA
AGGACGTGAAGTGGTCCTTTGACCGCGCGGTGAGCGTCGGCGGCTTCCCCACCTTCCAGATGTCGGCGGGCTCGCTGGAG
AAGAAGGAGCAGTTCGTGGTCGTGGACGACCACACCTTCCGCATCGACTATCTGCGCAAGGACAAGATGCTGCTGTTCAA
CGTGGCGGTGGTGGTGCCCTTCGTCATCAACTCCGCCCTCGCCCAGAAAAACGCCATGGCGGACGATCCGTGGGCAATGA
ACTGGCTGAAGACGAACACGGCCGGCGGCGGCGCCTACAAGGTGGAGAGCTGGAAGCCGGGCTCGGAGACGATCCTCACC
CGCTTCGACGGCTGGAAGAGCGGCAAGCTCCCCTCCATCCGCCGCATCATCATCCGCGACGTGCCCTCCGCCGGCACCCG
CCGGGCCATGCTGGAGCGGGGCGATGCGGACCTCTCCGCCGGCTTCCCGCCCAAGGATTTCGAGCAGCTCATCAAGGAGG
CCAAGGTGAAGGTGGTCGGCGTGCCGATCCCCAATTGCCTCTGGTACATCGCCCTCAACACGTCGAAGCCGCCCTTCGAC
AACGTGAAGCTGCGCCAGGCCATCGCCTGGGCGATGCCTTACCAGCAGATCCAGGACAACGCCTTCTTCGGCCGCGCCAT
TCCCATGTATGGCGCCAAGAGCACGACGCCCGCCGAGCCGGTGTGGCCGCAGCCCTTCCCCTATGCCACCGACCTTGAGA
AGGCGAAGGCGCTGATGGTGGAGGCCGGCTTCCCGAACGGGCTGGAAACGACGCTCTCGCTGGATGTGGGCACCGCGACT
GTGGGCGAGCCCACGGCCCTGCTCATTCAGGAAAACCTCGCCAAGATCGGCATCAAGGCCGCAGTGGAGAAGATCCCCGG
CGCCAACTGGCGCACGACGCTGAACAAGAAGGAGCTCCCCATGGTGCTCAACAGGTTCAGCGGCTGGCTGGATTATCCGG
AATACTATTTCTACTGGAACCTGCACGGCAACAATTCGATCTTCAACATCTCCGCCTACAAGAATGCGGAGATGGACAAG
CTGATCGATAAGGCCCGCTTCAGCGCCGACAAGGCGGAATACGCCGAGACGGTGAAGCAGTTCATCGCCATGTGCATGGC
CGAGGTGCCCATCGTGCCCCTCAACCAGCCCATGCATGACGTCGCCATGCAGAAGAGCGTCTCGGGCTACGAGTTCTGGT
TCCACCGTGAGCCGGACTATCGCCAGTTCACCAAGGGGTAA

Upstream 100 bases:

>100_bases
GCGGCCGTCATCTACGCCATGCTCAGCCTCTGAGGGGCTGGCCAGCCCTCCGAGCGGCAGGCACAAGCCTTGCTTACCTC
TGCGGCAACGGTACGAAACC

Downstream 100 bases:

>100_bases
TGCGCTTCGGGGCGGCGTTTGGGGGCTCGTGGGCTCCCAGCGCCCCTCTCAGCGGCCGGCGTCGCGCCCGGCCGTGCCCC
CTCCCAACCCTCCCCCCGCA

Product: peptide transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MPPRRNRMPFELPLDRRTLLKGSGTLGLSLLLGGTASAQARNETLLVVQELGPNSLDMHGVGSNQTVNGLSWNTYDRLLT
YAPKTLPDGTLSYDRATLAPELAERWEEAADGMSCTFHLRKDAVFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLE
KKEQFVVVDDHTFRIDYLRKDKMLLFNVAVVVPFVINSALAQKNAMADDPWAMNWLKTNTAGGGAYKVESWKPGSETILT
RFDGWKSGKLPSIRRIIIRDVPSAGTRRAMLERGDADLSAGFPPKDFEQLIKEAKVKVVGVPIPNCLWYIALNTSKPPFD
NVKLRQAIAWAMPYQQIQDNAFFGRAIPMYGAKSTTPAEPVWPQPFPYATDLEKAKALMVEAGFPNGLETTLSLDVGTAT
VGEPTALLIQENLAKIGIKAAVEKIPGANWRTTLNKKELPMVLNRFSGWLDYPEYYFYWNLHGNNSIFNISAYKNAEMDK
LIDKARFSADKAEYAETVKQFIAMCMAEVPIVPLNQPMHDVAMQKSVSGYEFWFHREPDYRQFTKG

Sequences:

>Translated_546_residues
MPPRRNRMPFELPLDRRTLLKGSGTLGLSLLLGGTASAQARNETLLVVQELGPNSLDMHGVGSNQTVNGLSWNTYDRLLT
YAPKTLPDGTLSYDRATLAPELAERWEEAADGMSCTFHLRKDAVFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLE
KKEQFVVVDDHTFRIDYLRKDKMLLFNVAVVVPFVINSALAQKNAMADDPWAMNWLKTNTAGGGAYKVESWKPGSETILT
RFDGWKSGKLPSIRRIIIRDVPSAGTRRAMLERGDADLSAGFPPKDFEQLIKEAKVKVVGVPIPNCLWYIALNTSKPPFD
NVKLRQAIAWAMPYQQIQDNAFFGRAIPMYGAKSTTPAEPVWPQPFPYATDLEKAKALMVEAGFPNGLETTLSLDVGTAT
VGEPTALLIQENLAKIGIKAAVEKIPGANWRTTLNKKELPMVLNRFSGWLDYPEYYFYWNLHGNNSIFNISAYKNAEMDK
LIDKARFSADKAEYAETVKQFIAMCMAEVPIVPLNQPMHDVAMQKSVSGYEFWFHREPDYRQFTKG
>Mature_545_residues
PPRRNRMPFELPLDRRTLLKGSGTLGLSLLLGGTASAQARNETLLVVQELGPNSLDMHGVGSNQTVNGLSWNTYDRLLTY
APKTLPDGTLSYDRATLAPELAERWEEAADGMSCTFHLRKDAVFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEK
KEQFVVVDDHTFRIDYLRKDKMLLFNVAVVVPFVINSALAQKNAMADDPWAMNWLKTNTAGGGAYKVESWKPGSETILTR
FDGWKSGKLPSIRRIIIRDVPSAGTRRAMLERGDADLSAGFPPKDFEQLIKEAKVKVVGVPIPNCLWYIALNTSKPPFDN
VKLRQAIAWAMPYQQIQDNAFFGRAIPMYGAKSTTPAEPVWPQPFPYATDLEKAKALMVEAGFPNGLETTLSLDVGTATV
GEPTALLIQENLAKIGIKAAVEKIPGANWRTTLNKKELPMVLNRFSGWLDYPEYYFYWNLHGNNSIFNISAYKNAEMDKL
IDKARFSADKAEYAETVKQFIAMCMAEVPIVPLNQPMHDVAMQKSVSGYEFWFHREPDYRQFTKG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=523, Percent_Identity=29.0630975143403, Blast_Score=162, Evalue=6e-41,
Organism=Escherichia coli, GI1789966, Length=542, Percent_Identity=26.1992619926199, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1787052, Length=485, Percent_Identity=26.3917525773196, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787495, Length=453, Percent_Identity=24.7240618101545, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787551, Length=509, Percent_Identity=25.9332023575639, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1789887, Length=351, Percent_Identity=24.7863247863248, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081878, Length=463, Percent_Identity=22.6781857451404, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61009; Mature: 60877

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRRNRMPFELPLDRRTLLKGSGTLGLSLLLGGTASAQARNETLLVVQELGPNSLDMHG
CCCCCCCCCEECCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEECC
VGSNQTVNGLSWNTYDRLLTYAPKTLPDGTLSYDRATLAPELAERWEEAADGMSCTFHLR
CCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEE
KDAVFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEKKEQFVVVDDHTFRIDYLRK
CCCEEECCCCCCHHCCCCCHHHEEECCCCCEEEECCCCCCCCCCEEEECCCEEEEEEECC
DKMLLFNVAVVVPFVINSALAQKNAMADDPWAMNWLKTNTAGGGAYKVESWKPGSETILT
CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCEEEE
RFDGWKSGKLPSIRRIIIRDVPSAGTRRAMLERGDADLSAGFPPKDFEQLIKEAKVKVVG
EECCCCCCCCCHHHHHHEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEE
VPIPNCLWYIALNTSKPPFDNVKLRQAIAWAMPYQQIQDNAFFGRAIPMYGAKSTTPAEP
CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHCCCEECCCCCCCCCCCCCCCCC
VWPQPFPYATDLEKAKALMVEAGFPNGLETTLSLDVGTATVGEPTALLIQENLAKIGIKA
CCCCCCCCCCCHHHHHEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHH
AVEKIPGANWRTTLNKKELPMVLNRFSGWLDYPEYYFYWNLHGNNSIFNISAYKNAEMDK
HHHHCCCCCCEECCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEECCCCCHHHH
LIDKARFSADKAEYAETVKQFIAMCMAEVPIVPLNQPMHDVAMQKSVSGYEFWFHREPDY
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCCCEEEEEECCCCH
RQFTKG
HHHCCC
>Mature Secondary Structure 
PPRRNRMPFELPLDRRTLLKGSGTLGLSLLLGGTASAQARNETLLVVQELGPNSLDMHG
CCCCCCCCEECCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEECC
VGSNQTVNGLSWNTYDRLLTYAPKTLPDGTLSYDRATLAPELAERWEEAADGMSCTFHLR
CCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEE
KDAVFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEKKEQFVVVDDHTFRIDYLRK
CCCEEECCCCCCHHCCCCCHHHEEECCCCCEEEECCCCCCCCCCEEEECCCEEEEEEECC
DKMLLFNVAVVVPFVINSALAQKNAMADDPWAMNWLKTNTAGGGAYKVESWKPGSETILT
CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCEEEE
RFDGWKSGKLPSIRRIIIRDVPSAGTRRAMLERGDADLSAGFPPKDFEQLIKEAKVKVVG
EECCCCCCCCCHHHHHHEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEE
VPIPNCLWYIALNTSKPPFDNVKLRQAIAWAMPYQQIQDNAFFGRAIPMYGAKSTTPAEP
CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHCCCEECCCCCCCCCCCCCCCCC
VWPQPFPYATDLEKAKALMVEAGFPNGLETTLSLDVGTATVGEPTALLIQENLAKIGIKA
CCCCCCCCCCCHHHHHEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHH
AVEKIPGANWRTTLNKKELPMVLNRFSGWLDYPEYYFYWNLHGNNSIFNISAYKNAEMDK
HHHHCCCCCCEECCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEECCCCCHHHH
LIDKARFSADKAEYAETVKQFIAMCMAEVPIVPLNQPMHDVAMQKSVSGYEFWFHREPDY
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCCCEEEEEECCCCH
RQFTKG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]