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The map label for this gene is intD [C]

Identifier: 158425194

GI number: 158425194

Start: 4097163

End: 4098284

Strand: Reverse

Name: intD [C]

Synonym: AZC_3570

Alternate gene names: 158425194

Gene position: 4098284-4097163 (Counterclockwise)

Preceding gene: 158425195

Following gene: 158425192

Centisome position: 76.32

GC content: 61.85

Gene sequence:

>1122_bases
GTGCAGGCTCACCCCCGAGGGGGAGCGGGTGGTCCGCTCCCTCCTTCACTACGTTGGAGAGAAGGAGGCCGCATAATGGC
AGTGAGACCAAGAGGTGGCTCTTGGCAGGCGGACATCACAGTCAAGGGCCAGCGCTATCGAGAGACGTTCGACAGCGAGG
CTGAAGCTAAGGCGTGGGAACTGAATGCCCGCGCCGCAGCGGTCAAAGGCGAGCCTATTCCGCGCCCAATTGCTCCCTCA
AAGGGGACTGATGCACCAAGGGGACAGTCCCGCGAGGACGGTGCATTGACCCTGAGCGCGGTCATGTGGAAGGCATACGA
CAAGTTCTGGAAGGGTGGCCGGAGCGATGCGAAGGCTGCCGTCAACATCCGGCAGGCCGAGGCATATTTCGGCAAGGACT
GCCCGGTATCGCGGATCGACACCGACGCAATCGACGGTTTCGTTGCCGACTGCATCGCCAAGCGCAACAGCAACGGCACG
GTCAACCGCAAGCTGGCGATCCTGTCCAAGTCCCTGCGCTATGCGTTCGACCGGGGGCTCATCCCCAAGATGCCCAAGAT
CGACCGCAAGAGCGAGGGCGTGGGCCGCTTCCGGTGGCTGGATGAGGACGAGGAGAAGGCCCTTCTGGACACCTTCCGCT
CATGGGGGAAGGACGACCACGCCGAGGTCATCGAGACCCTGATTGATACAGGGATGCGCCCGAGCGAGCTTTACCGGCTC
ACCCCTCGCGACGTGGACCTGAAGACAGGGGCCATCATGATCTGGATGACCAAGACCGACAATCCGCGCACGGTCTATGC
GACCAAGCGGGTGAAGGCGATCCTTCAGCGGCGCATCGGTGCAGTCACTGCACCGACCGAGAAGCTATTCCCCTACGATA
ACTTCTGGATGCGCCATACATGGGACCGGGCGCGTCTGCACCTTGGGATGGAGAACGATCCCCATTTCGTTCCCTACATC
TGCCGGCACACCTGCGCGTCCCGGCTGGTGCAGCGGGGCGTTCCGATCAACGTGGTCAAGGAATGGCTGGGCCATACCTC
GATCCAGATGACCATGCGGTATGCTTTCCTTGCTCCGAAGAACCTCATGAGCGCTGCGAGCGTCTTGGAGGCTGCGGAAT
AA

Upstream 100 bases:

>100_bases
GCAAGTCGAGCGTGTCGCGTAACATTGCCGCTCTGTCCAAGGAGCACGGCAAGGGCCTCATAACCTACTCCGAAGACCTT
CTAGACCGCCGGAACAAGGT

Downstream 100 bases:

>100_bases
GGTGCTAGAGGGCACCGCAGGTACACCTGAGTCTCTTGAGGTGTACCGATTTGTGACCGTGACGGACACGTCACGGGACC
TGTGACCGGGCAGCCGGTCT

Product: phage HP1 integrase

Products: NA

Alternate protein names: Phage Integrase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Integrase; Site-Specific Integrase/Recombinase; Integrase/Recombinase XerD; Phage-Related Integrase; Phage HP1 Integrase; Integrase/Recombinase; Site Specific Recombinase; Integrase Protein; Site-Specific Recombinase Phage Integrase Family Protein; Xylulose-5-Phosphate/Fructose-6-Phosphate Phosphoketolase; Phage Integrase Family Site Specific Recombinase; Integrative Genetic Element

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MQAHPRGGAGGPLPPSLRWREGGRIMAVRPRGGSWQADITVKGQRYRETFDSEAEAKAWELNARAAAVKGEPIPRPIAPS
KGTDAPRGQSREDGALTLSAVMWKAYDKFWKGGRSDAKAAVNIRQAEAYFGKDCPVSRIDTDAIDGFVADCIAKRNSNGT
VNRKLAILSKSLRYAFDRGLIPKMPKIDRKSEGVGRFRWLDEDEEKALLDTFRSWGKDDHAEVIETLIDTGMRPSELYRL
TPRDVDLKTGAIMIWMTKTDNPRTVYATKRVKAILQRRIGAVTAPTEKLFPYDNFWMRHTWDRARLHLGMENDPHFVPYI
CRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYAFLAPKNLMSAASVLEAAE

Sequences:

>Translated_373_residues
MQAHPRGGAGGPLPPSLRWREGGRIMAVRPRGGSWQADITVKGQRYRETFDSEAEAKAWELNARAAAVKGEPIPRPIAPS
KGTDAPRGQSREDGALTLSAVMWKAYDKFWKGGRSDAKAAVNIRQAEAYFGKDCPVSRIDTDAIDGFVADCIAKRNSNGT
VNRKLAILSKSLRYAFDRGLIPKMPKIDRKSEGVGRFRWLDEDEEKALLDTFRSWGKDDHAEVIETLIDTGMRPSELYRL
TPRDVDLKTGAIMIWMTKTDNPRTVYATKRVKAILQRRIGAVTAPTEKLFPYDNFWMRHTWDRARLHLGMENDPHFVPYI
CRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYAFLAPKNLMSAASVLEAAE
>Mature_373_residues
MQAHPRGGAGGPLPPSLRWREGGRIMAVRPRGGSWQADITVKGQRYRETFDSEAEAKAWELNARAAAVKGEPIPRPIAPS
KGTDAPRGQSREDGALTLSAVMWKAYDKFWKGGRSDAKAAVNIRQAEAYFGKDCPVSRIDTDAIDGFVADCIAKRNSNGT
VNRKLAILSKSLRYAFDRGLIPKMPKIDRKSEGVGRFRWLDEDEEKALLDTFRSWGKDDHAEVIETLIDTGMRPSELYRL
TPRDVDLKTGAIMIWMTKTDNPRTVYATKRVKAILQRRIGAVTAPTEKLFPYDNFWMRHTWDRARLHLGMENDPHFVPYI
CRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYAFLAPKNLMSAASVLEAAE

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41996; Mature: 41996

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAHPRGGAGGPLPPSLRWREGGRIMAVRPRGGSWQADITVKGQRYRETFDSEAEAKAWE
CCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEEEEEECCHHHHHHHCCCCCCCEEE
LNARAAAVKGEPIPRPIAPSKGTDAPRGQSREDGALTLSAVMWKAYDKFWKGGRSDAKAA
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHH
VNIRQAEAYFGKDCPVSRIDTDAIDGFVADCIAKRNSNGTVNRKLAILSKSLRYAFDRGL
EEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
IPKMPKIDRKSEGVGRFRWLDEDEEKALLDTFRSWGKDDHAEVIETLIDTGMRPSELYRL
CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHEEEE
TPRDVDLKTGAIMIWMTKTDNPRTVYATKRVKAILQRRIGAVTAPTEKLFPYDNFWMRHT
CCCCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCC
WDRARLHLGMENDPHFVPYICRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYAFLAPK
CCHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCH
NLMSAASVLEAAE
HHHHHHHHHHHCC
>Mature Secondary Structure
MQAHPRGGAGGPLPPSLRWREGGRIMAVRPRGGSWQADITVKGQRYRETFDSEAEAKAWE
CCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEEEEEECCHHHHHHHCCCCCCCEEE
LNARAAAVKGEPIPRPIAPSKGTDAPRGQSREDGALTLSAVMWKAYDKFWKGGRSDAKAA
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHH
VNIRQAEAYFGKDCPVSRIDTDAIDGFVADCIAKRNSNGTVNRKLAILSKSLRYAFDRGL
EEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
IPKMPKIDRKSEGVGRFRWLDEDEEKALLDTFRSWGKDDHAEVIETLIDTGMRPSELYRL
CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHEEEE
TPRDVDLKTGAIMIWMTKTDNPRTVYATKRVKAILQRRIGAVTAPTEKLFPYDNFWMRHT
CCCCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCC
WDRARLHLGMENDPHFVPYICRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYAFLAPK
CCHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCH
NLMSAASVLEAAE
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA