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The map label for this gene is 158425107

Identifier: 158425107

GI number: 158425107

Start: 4000890

End: 4001456

Strand: Reverse

Name: 158425107

Synonym: AZC_3483

Alternate gene names: NA

Gene position: 4001456-4000890 (Counterclockwise)

Preceding gene: 158425118

Following gene: 158425106

Centisome position: 74.52

GC content: 69.31

Gene sequence:

>567_bases
GTGGACGGTTCGGCCCGCGACCAGCAGTGGAGCGAATGGATGCGCCTTGCGCTTGCGGGCGACGGCGCCGCCTATCGGCG
GTTCCTCAGCGAGGTGACGCCGCATCTGCGGATGCTCGCGCAGCGCCGCTGCCGGGCCTTCGGCGCACCGGCGGGAGAGG
CGGAGGATATCGTGCAGGAAGTCCTGCTGGCGGTGCATCTCAAGCGCGGTACGTGGGACCCGGCGCGGCCCATCGGACCG
TGGCTTTCGGCCATCGTGCGCAACAAGCTGATCGACAGCCTGCGCCGGCGCGGGCGTGAACCGACGACGCCCATCGAGGA
TGTGATGGAGACGCTGGAGGCGGCACCCGTGGCGGACGGAACGGAGCGGCTCGATGCCTTACAGATGCTGGGACATCTGC
GCGATCCGCAGCGCGATATCGTCCGCTCCATCTCTCTGGAGGGGGCGGGCGTGCGCGAGACTGCGGCGCGCCTGAAGATG
ACCGAGGGGGCCGTGCGCGTGGCGCTGCATCGCGCGCTGAAGACGCTGGCCAAGATTTACCGGAGCGAGCCCCATGAAGA
CCGATGA

Upstream 100 bases:

>100_bases
CGCGGGACAAAGCGGCCAATGCCATCGCGCGGAACGCCGCGCATTCTTTCTTCGTCATGACGTAACATTCCAGATCGCCG
CAACGTAAGGGTGGACAGGG

Downstream 100 bases:

>100_bases
CCTGATCCGCCTGATGGCGGAGGACGCGCCGGTCCGGGTGCGGCTTTCCACCGTTCTTGCCCTGGCGATCGCCGCGGGGG
TCGTCTGCGCCGGGCTTATC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase Sigma Factor SigD; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; ECF Family Sigma Factor D; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; ECF-Family Sigma Factor D; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDGSARDQQWSEWMRLALAGDGAAYRRFLSEVTPHLRMLAQRRCRAFGAPAGEAEDIVQEVLLAVHLKRGTWDPARPIGP
WLSAIVRNKLIDSLRRRGREPTTPIEDVMETLEAAPVADGTERLDALQMLGHLRDPQRDIVRSISLEGAGVRETAARLKM
TEGAVRVALHRALKTLAKIYRSEPHEDR

Sequences:

>Translated_188_residues
MDGSARDQQWSEWMRLALAGDGAAYRRFLSEVTPHLRMLAQRRCRAFGAPAGEAEDIVQEVLLAVHLKRGTWDPARPIGP
WLSAIVRNKLIDSLRRRGREPTTPIEDVMETLEAAPVADGTERLDALQMLGHLRDPQRDIVRSISLEGAGVRETAARLKM
TEGAVRVALHRALKTLAKIYRSEPHEDR
>Mature_188_residues
MDGSARDQQWSEWMRLALAGDGAAYRRFLSEVTPHLRMLAQRRCRAFGAPAGEAEDIVQEVLLAVHLKRGTWDPARPIGP
WLSAIVRNKLIDSLRRRGREPTTPIEDVMETLEAAPVADGTERLDALQMLGHLRDPQRDIVRSISLEGAGVRETAARLKM
TEGAVRVALHRALKTLAKIYRSEPHEDR

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21104; Mature: 21104

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGSARDQQWSEWMRLALAGDGAAYRRFLSEVTPHLRMLAQRRCRAFGAPAGEAEDIVQE
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VLLAVHLKRGTWDPARPIGPWLSAIVRNKLIDSLRRRGREPTTPIEDVMETLEAAPVADG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCH
TERLDALQMLGHLRDPQRDIVRSISLEGAGVRETAARLKMTEGAVRVALHRALKTLAKIY
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSEPHEDR
HCCCCCCC
>Mature Secondary Structure
MDGSARDQQWSEWMRLALAGDGAAYRRFLSEVTPHLRMLAQRRCRAFGAPAGEAEDIVQE
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VLLAVHLKRGTWDPARPIGPWLSAIVRNKLIDSLRRRGREPTTPIEDVMETLEAAPVADG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCH
TERLDALQMLGHLRDPQRDIVRSISLEGAGVRETAARLKMTEGAVRVALHRALKTLAKIY
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSEPHEDR
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA