BacMap

Definition	Azorhizobium caulinodans ORS 571, complete genome.
Accession	NC_009937
Length	5,369,772

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The map label for this gene is phnL [H]

Identifier: 158425022

GI number: 158425022

Start: 3928014

End: 3928772

Strand: Direct

Name: phnL [H]

Synonym: AZC_3398

Alternate gene names: 158425022

Gene position: 3928014-3928772 (Clockwise)

Preceding gene: 158425021

Following gene: 158425023

Centisome position: 73.15

GC content: 70.36

Gene sequence:

>759_bases
ATGACGCTCCACACCGCTCCCCAGACGGCGGCGACACCGCTGCCTCCCGCCCTTCCAGCAGGCACCCTGCTGCGCGTGGA
AAGCCTCGCCAAGGCCTTCACCCTGCATCTGCGCGGCGGCGCCCGTCTGCCGGTGGTGGATGGCGCGGGCTTCGAGGTGC
GCGCCGGCACCTGCGTGGCGCTGGGCGGCCCGTCCGGTGCCGGCAAGAGCTCCATCCTCAAGATGGTCTATGGCAACTAT
CGCACGGACGCCGGAGCCATCTGGCTGATGGACGAGACCAGTCCGGTCGATGTCGCCCACGCCGCCCCCCGCCAGATGCT
GGACCTGCGCCGCCGGCGCATCGGCTATGTGAGCCAGTTCCTGCGTGTCATCCCGCGCGTCTCCGCCCTCGATGTGGTGG
CCGAGCCCCTGATGGCGGAAGGCGTCCCACCCGAGCAGGCGCGCGCGAAGGCGCGCGAGCTTCTGGCACGCCTCAATCTG
CCGGAGCGGCTGTGGAGCCTGCCGCCCGCCACCTTCTCCGGCGGCGAGCAGCAGCGCGTGAACGTGGCGCGCGGGTTCAT
CTCCAGCCGGCCCCTCCTGCTGCTGGACGAGCCCACCGCCTCGCTCGACGTAGTGAACCGGCAGGTGGTGATCGACCTCA
TCACCGAGAAGAAGGCCGCCGGCACCGGGCTTCTCGGCATTTTCCATGACGCGGATACGCGCGATGCGGTGGCGGACGAA
GTGGTAGACGTCTCCGCCTTCGCCACCCGGCCCAACTGA

Upstream 100 bases:

>100_bases
TGAAGGAAGGACGGGTGATCGAGGAAGGCCTCACCGACCAGGTGCTCGACGATCCGCGCGAGCCCTATACCCAACTCCTC
GTCTCCTCGGTGCTCGCCGC

Downstream 100 bases:

>100_bases
CAGAAGGAACAGCCCATGTCCGAGACCGGAACCGGCGAACAGATCTTCGCCAACGCCCGCATCGTGCTGGCGGACCGCAT
CCTCGAAGGCCATGTGCAGG

Product: ATP-binding protein phosphonate transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTLHTAPQTAATPLPPALPAGTLLRVESLAKAFTLHLRGGARLPVVDGAGFEVRAGTCVALGGPSGAGKSSILKMVYGNY
RTDAGAIWLMDETSPVDVAHAAPRQMLDLRRRRIGYVSQFLRVIPRVSALDVVAEPLMAEGVPPEQARAKARELLARLNL
PERLWSLPPATFSGGEQQRVNVARGFISSRPLLLLDEPTASLDVVNRQVVIDLITEKKAAGTGLLGIFHDADTRDAVADE
VVDVSAFATRPN

Sequences:

>Translated_252_residues
MTLHTAPQTAATPLPPALPAGTLLRVESLAKAFTLHLRGGARLPVVDGAGFEVRAGTCVALGGPSGAGKSSILKMVYGNY
RTDAGAIWLMDETSPVDVAHAAPRQMLDLRRRRIGYVSQFLRVIPRVSALDVVAEPLMAEGVPPEQARAKARELLARLNL
PERLWSLPPATFSGGEQQRVNVARGFISSRPLLLLDEPTASLDVVNRQVVIDLITEKKAAGTGLLGIFHDADTRDAVADE
VVDVSAFATRPN
>Mature_251_residues
TLHTAPQTAATPLPPALPAGTLLRVESLAKAFTLHLRGGARLPVVDGAGFEVRAGTCVALGGPSGAGKSSILKMVYGNYR
TDAGAIWLMDETSPVDVAHAAPRQMLDLRRRRIGYVSQFLRVIPRVSALDVVAEPLMAEGVPPEQARAKARELLARLNLP
ERLWSLPPATFSGGEQQRVNVARGFISSRPLLLLDEPTASLDVVNRQVVIDLITEKKAAGTGLLGIFHDADTRDAVADEV
VDVSAFATRPN

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4778

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=24.0740740740741, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=24.0740740740741, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI105990541, Length=201, Percent_Identity=26.865671641791, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=24.6231155778894, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1790534, Length=219, Percent_Identity=52.9680365296804, Blast_Score=239, Evalue=1e-64,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=31.1004784688995, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=33.6448598130841, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788225, Length=162, Percent_Identity=37.6543209876543, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789873, Length=210, Percent_Identity=32.3809523809524, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787105, Length=213, Percent_Identity=30.5164319248826, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI48995001, Length=223, Percent_Identity=32.2869955156951, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789962, Length=201, Percent_Identity=29.8507462686567, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=30.4568527918782, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081709, Length=199, Percent_Identity=33.6683417085427, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787029, Length=199, Percent_Identity=30.6532663316583, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=26.7857142857143, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788506, Length=255, Percent_Identity=30.1960784313725, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=25.3333333333333, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789593, Length=223, Percent_Identity=31.390134529148, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787759, Length=210, Percent_Identity=30.4761904761905, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=27.1493212669683, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788450, Length=204, Percent_Identity=32.3529411764706, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787500, Length=207, Percent_Identity=27.536231884058, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790544, Length=225, Percent_Identity=30.6666666666667, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787758, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693107, Length=228, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=28.1385281385281, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=25.3275109170306, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=26.7326732673267, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=32.1243523316062, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789032, Length=197, Percent_Identity=26.9035532994924, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=27.8846153846154, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=31.5217391304348, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788644, Length=183, Percent_Identity=30.6010928961749, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=199, Percent_Identity=29.1457286432161, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789751, Length=221, Percent_Identity=27.6018099547511, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789891, Length=190, Percent_Identity=31.0526315789474, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994997, Length=169, Percent_Identity=32.5443786982249, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081791, Length=211, Percent_Identity=27.4881516587678, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994883, Length=249, Percent_Identity=25.7028112449799, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787547, Length=226, Percent_Identity=26.1061946902655, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788472, Length=216, Percent_Identity=25.462962962963, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788897, Length=218, Percent_Identity=26.1467889908257, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787164, Length=228, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786803, Length=207, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786319, Length=185, Percent_Identity=26.4864864864865, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789890, Length=211, Percent_Identity=29.8578199052133, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=210, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=196, Percent_Identity=23.469387755102, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85726357, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666092, Length=206, Percent_Identity=24.7572815533981, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281363262, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24653245, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=178, Percent_Identity=30.8988764044944, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85725262, Length=187, Percent_Identity=28.8770053475936, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012701 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26895; Mature: 26764

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLHTAPQTAATPLPPALPAGTLLRVESLAKAFTLHLRGGARLPVVDGAGFEVRAGTCVA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCEEECCCCCEEECCEEEE
LGGPSGAGKSSILKMVYGNYRTDAGAIWLMDETSPVDVAHAAPRQMLDLRRRRIGYVSQF
ECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHHHH
LRVIPRVSALDVVAEPLMAEGVPPEQARAKARELLARLNLPERLWSLPPATFSGGEQQRV
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHH
NVARGFISSRPLLLLDEPTASLDVVNRQVVIDLITEKKAAGTGLLGIFHDADTRDAVADE
HHHHHHHCCCCEEEEECCCCHHHHHHHEEEEEEHHCCCCCCCCEEEEEECCCCHHHHHHH
VVDVSAFATRPN
HHHHHHCCCCCC
>Mature Secondary Structure 
TLHTAPQTAATPLPPALPAGTLLRVESLAKAFTLHLRGGARLPVVDGAGFEVRAGTCVA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCEEECCCCCEEECCEEEE
LGGPSGAGKSSILKMVYGNYRTDAGAIWLMDETSPVDVAHAAPRQMLDLRRRRIGYVSQF
ECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHHHH
LRVIPRVSALDVVAEPLMAEGVPPEQARAKARELLARLNLPERLWSLPPATFSGGEQQRV
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHH
NVARGFISSRPLLLLDEPTASLDVVNRQVVIDLITEKKAAGTGLLGIFHDADTRDAVADE
HHHHHHHCCCCEEEEECCCCHHHHHHHEEEEEEHHCCCCCCCCEEEEEECCCCHHHHHHH
VVDVSAFATRPN
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]