| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is phnK [H]
Identifier: 158425021
GI number: 158425021
Start: 3927238
End: 3928017
Strand: Direct
Name: phnK [H]
Synonym: AZC_3397
Alternate gene names: 158425021
Gene position: 3927238-3928017 (Clockwise)
Preceding gene: 158425020
Following gene: 158425022
Centisome position: 73.14
GC content: 68.46
Gene sequence:
>780_bases ATGACGGACGATGCTCCCCTTCTCGTCGCCGAGGGGCTGACGCGCTATTACGGCGCCCGCCTCGGCTGCCGGGATGTCTC CCTCACGCTCCATCCGGGCGAAGTGCTTGCCATCGTGGGCGAGAGCGGCTCCGGCAAGTCCACCTTGCTCGGCCTGCTCT CCACGGAGCTGGAGCCCTCCGCCGGCCATGTGAGCTACCGCATGCGCGACGGCACCCTTCGTGACCTCGCCTCCCTCACC GAGGGCGAGCGACGTCTGCTGCTGCGCACCGACTGGGGTTTCGTGCGCCAGCATGCGGAGAAGGGCCTGCGCATGGCGGT CTCCGCCGGTGGCAATGTGGGCGAGCGGCTGATGGCGGTGGGCTGGCGCAACTATGCCGGCATCCGCGACGAGGCCATCG ACTGGCTCTCCCGCGTGGAAATCCAGCCGGACCGCATCGATGACGATCCGCGCGCCTTCTCCGGCGGCATGCGCCAGCGC CTCCAGATCGCCCGCAACCTCGTCACCAAGCCGCGCCTCGTCTTCATGGACGAGCCCACCGGGGGGCTCGATGTCTCCGT GCAGGCGCGCCTGCTCGACCTCATCCGCTCGCTGGTGGCGGATCTTGGCCTTGCGGTCGTCATCGTCACCCACGACCTTG CGGTCGCCCGCCTGCTCTCCCACCGCATCATGGTGATGAAGGAAGGACGGGTGATCGAGGAAGGCCTCACCGACCAGGTG CTCGACGATCCGCGCGAGCCCTATACCCAACTCCTCGTCTCCTCGGTGCTCGCCGCATGA
Upstream 100 bases:
>100_bases ACCCCCCTCCCCACCCCTCCCCCGCAAGGGGGGAGGGAGATGGCCGCTCGGCTAGACAGCCCACCATCCTTCCCCAGACA CACGTCATCGAGGCCCGGCC
Downstream 100 bases:
>100_bases CGCTCCACACCGCTCCCCAGACGGCGGCGACACCGCTGCCTCCCGCCCTTCCAGCAGGCACCCTGCTGCGCGTGGAAAGC CTCGCCAAGGCCTTCACCCT
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MTDDAPLLVAEGLTRYYGARLGCRDVSLTLHPGEVLAIVGESGSGKSTLLGLLSTELEPSAGHVSYRMRDGTLRDLASLT EGERRLLLRTDWGFVRQHAEKGLRMAVSAGGNVGERLMAVGWRNYAGIRDEAIDWLSRVEIQPDRIDDDPRAFSGGMRQR LQIARNLVTKPRLVFMDEPTGGLDVSVQARLLDLIRSLVADLGLAVVIVTHDLAVARLLSHRIMVMKEGRVIEEGLTDQV LDDPREPYTQLLVSSVLAA
Sequences:
>Translated_259_residues MTDDAPLLVAEGLTRYYGARLGCRDVSLTLHPGEVLAIVGESGSGKSTLLGLLSTELEPSAGHVSYRMRDGTLRDLASLT EGERRLLLRTDWGFVRQHAEKGLRMAVSAGGNVGERLMAVGWRNYAGIRDEAIDWLSRVEIQPDRIDDDPRAFSGGMRQR LQIARNLVTKPRLVFMDEPTGGLDVSVQARLLDLIRSLVADLGLAVVIVTHDLAVARLLSHRIMVMKEGRVIEEGLTDQV LDDPREPYTQLLVSSVLAA >Mature_258_residues TDDAPLLVAEGLTRYYGARLGCRDVSLTLHPGEVLAIVGESGSGKSTLLGLLSTELEPSAGHVSYRMRDGTLRDLASLTE GERRLLLRTDWGFVRQHAEKGLRMAVSAGGNVGERLMAVGWRNYAGIRDEAIDWLSRVEIQPDRIDDDPRAFSGGMRQRL QIARNLVTKPRLVFMDEPTGGLDVSVQARLLDLIRSLVADLGLAVVIVTHDLAVARLLSHRIMVMKEGRVIEEGLTDQVL DDPREPYTQLLVSSVLAA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=240, Percent_Identity=27.9166666666667, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI6005701, Length=246, Percent_Identity=26.0162601626016, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI27477115, Length=245, Percent_Identity=24.8979591836735, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI47078218, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI45446740, Length=235, Percent_Identity=25.1063829787234, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI9961250, Length=233, Percent_Identity=27.8969957081545, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI9665248, Length=228, Percent_Identity=28.0701754385965, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4505771, Length=231, Percent_Identity=27.7056277056277, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI9961252, Length=231, Percent_Identity=27.7056277056277, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI9955963, Length=234, Percent_Identity=28.6324786324786, Blast_Score=72, Evalue=7e-13, Organism=Escherichia coli, GI48994997, Length=254, Percent_Identity=64.1732283464567, Blast_Score=310, Evalue=6e-86, Organism=Escherichia coli, GI1789962, Length=265, Percent_Identity=35.4716981132075, Blast_Score=148, Evalue=4e-37, Organism=Escherichia coli, GI1789963, Length=238, Percent_Identity=35.7142857142857, Blast_Score=137, Evalue=5e-34, Organism=Escherichia coli, GI1787500, Length=232, Percent_Identity=34.051724137931, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=35.6589147286822, Blast_Score=130, Evalue=8e-32, Organism=Escherichia coli, GI1787758, Length=233, Percent_Identity=36.9098712446352, Blast_Score=130, Evalue=8e-32, Organism=Escherichia coli, GI145693107, Length=244, Percent_Identity=33.6065573770492, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI48994883, Length=240, Percent_Identity=34.1666666666667, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1789032, Length=249, Percent_Identity=32.1285140562249, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787759, Length=234, Percent_Identity=35.8974358974359, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI87081791, Length=253, Percent_Identity=31.2252964426877, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788225, Length=249, Percent_Identity=31.7269076305221, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1789672, Length=252, Percent_Identity=28.1746031746032, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=39.0697674418605, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=31.0043668122271, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=243, Percent_Identity=30.8641975308642, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=29.2372881355932, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=32.7102803738318, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786872, Length=257, Percent_Identity=31.1284046692607, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787547, Length=268, Percent_Identity=28.3582089552239, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1787548, Length=238, Percent_Identity=28.1512605042017, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788644, Length=253, Percent_Identity=31.6205533596838, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=29.9145299145299, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=31.6455696202532, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787370, Length=251, Percent_Identity=27.0916334661355, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=27.9835390946502, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787164, Length=248, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1790162, Length=261, Percent_Identity=30.2681992337165, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=27.1255060728745, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87081709, Length=245, Percent_Identity=27.7551020408163, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1787712, Length=238, Percent_Identity=28.9915966386555, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=29.2237442922374, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1790467, Length=254, Percent_Identity=28.740157480315, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1790190, Length=226, Percent_Identity=27.4336283185841, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=32.5688073394495, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=27.3109243697479, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786803, Length=244, Percent_Identity=29.0983606557377, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=31.4814814814815, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787792, Length=236, Percent_Identity=29.6610169491525, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=34.9282296650718, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=235, Percent_Identity=28.5106382978723, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786253, Length=217, Percent_Identity=29.4930875576037, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=30.0884955752212, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786698, Length=214, Percent_Identity=28.0373831775701, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789593, Length=248, Percent_Identity=28.2258064516129, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790544, Length=246, Percent_Identity=28.0487804878049, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=27.5423728813559, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1789751, Length=247, Percent_Identity=27.9352226720648, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789991, Length=231, Percent_Identity=28.1385281385281, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788897, Length=245, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790534, Length=216, Percent_Identity=32.4074074074074, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788210, Length=243, Percent_Identity=26.3374485596708, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48995001, Length=234, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI87081782, Length=242, Percent_Identity=25.2066115702479, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=24.8927038626609, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533608, Length=242, Percent_Identity=27.2727272727273, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193208177, Length=241, Percent_Identity=27.8008298755187, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71984940, Length=221, Percent_Identity=30.316742081448, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209740, Length=237, Percent_Identity=24.4725738396624, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=231, Percent_Identity=28.1385281385281, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=25.7777777777778, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281363262, Length=238, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24653245, Length=238, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=23.2456140350877, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI23397593, Length=247, Percent_Identity=27.9352226720648, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI28574744, Length=211, Percent_Identity=26.5402843601896, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24659289, Length=222, Percent_Identity=26.1261261261261, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 28434; Mature: 28303
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDDAPLLVAEGLTRYYGARLGCRDVSLTLHPGEVLAIVGESGSGKSTLLGLLSTELEPS CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCC AGHVSYRMRDGTLRDLASLTEGERRLLLRTDWGFVRQHAEKGLRMAVSAGGNVGERLMAV CCCEEEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEEECCCCHHHHHHHH GWRNYAGIRDEAIDWLSRVEIQPDRIDDDPRAFSGGMRQRLQIARNLVTKPRLVFMDEPT HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC GGLDVSVQARLLDLIRSLVADLGLAVVIVTHDLAVARLLSHRIMVMKEGRVIEEGLTDQV CCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHEEEECCCHHHHCCHHHH LDDPREPYTQLLVSSVLAA HCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TDDAPLLVAEGLTRYYGARLGCRDVSLTLHPGEVLAIVGESGSGKSTLLGLLSTELEPS CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCC AGHVSYRMRDGTLRDLASLTEGERRLLLRTDWGFVRQHAEKGLRMAVSAGGNVGERLMAV CCCEEEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEEECCCCHHHHHHHH GWRNYAGIRDEAIDWLSRVEIQPDRIDDDPRAFSGGMRQRLQIARNLVTKPRLVFMDEPT HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC GGLDVSVQARLLDLIRSLVADLGLAVVIVTHDLAVARLLSHRIMVMKEGRVIEEGLTDQV CCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHEEEECCCHHHHCCHHHH LDDPREPYTQLLVSSVLAA HCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]