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The map label for this gene is cph2 [H]

Identifier: 158425004

GI number: 158425004

Start: 3909099

End: 3909956

Strand: Direct

Name: cph2 [H]

Synonym: AZC_3380

Alternate gene names: 158425004

Gene position: 3909099-3909956 (Clockwise)

Preceding gene: 158425002

Following gene: 158425005

Centisome position: 72.8

GC content: 66.78

Gene sequence:

>858_bases
GTGCGCCTCGACGAGACATGCTTCCTCATCCTGCGGCTCGCGACGTCGGGATTGTGCATGTGGGCGGCCGTCCTGTCGCT
GCTGCATGCGCAGCACTATGTGCGAAACCTGCGGCGGCCGGCGACGCTGCGTTATGCAGGAGCGATCATCGTGCTGGTGA
TCGGCGCCCTGGCACTGGCCTCGGGCTATAACGAGAGCATCGTTCATCACGGGCGCGAGATCGCCGTTCTGGACTGGGCC
TGGGCGGTCTCGGACGTACTGATCCTCATCTTCTACATTCTCGCCTTGCGCACCCTGCGGCATCGGGATCTGCGCGAAGC
ACGGCTGATGATCGAAAGCCGCCGGGACGTCCTCACCCAACTGCCCAATCGCGCCGGTTTCGACGAACAGGCGATGCGCA
TTCTTGGGGATTGCCAGCGCGCGGGACTGCCCGCCGCCGTCGCACTGTTCGACATCGACCACTTCAAGAAGATCAATGAC
GGCTGGGGGCATCCGGCCGGCGACGCAGTGCTGAAGAACCTCGCCGACGCGGCGCAGGACGTGACCCGGAGCACAGACGC
CTTCGCGCGCTTCGGCGGCGAGGAATTCGTCATGATCCTCAAGGGCGTGAGTGCCGAGGCCGCTTTCGTGCATGTGGAGC
GTATCCGCCGGGCCATCTCGCGCGACGTGCCACACCCCTCGGGCAGCGGCCGCATCACCGTATCTGCCGGCCTCGCCGAC
GTGCGGACCTATGATCAAGCCGGCCTCACCGCCGCGATCTCCCGCGCCGACGAGGCGCTCTATGCGGCAAAGGCCGCTGG
ACGCGACCGGACCATGCTGGCCGCCACCGATGCAGCGACGGCCGCGGCATCGGCCTGA

Upstream 100 bases:

>100_bases
TCCCCATCGAGGTGCGCGCACCTTGCATGCCGGTCACGATTTCCCTCGCCTGCCACGGTACCCACATGCATGATGCAGGC
TATGAAACGCGGGAGAAACC

Downstream 100 bases:

>100_bases
GGACCGACGGTCGAGCCACGACGGCTGCGACAAAGCGGAACGCCGTGTCTTTCTGAAATTTTCGGGCCTGAACTTTCCCG
CCGCGCTCCGCGTTCAGACA

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MRLDETCFLILRLATSGLCMWAAVLSLLHAQHYVRNLRRPATLRYAGAIIVLVIGALALASGYNESIVHHGREIAVLDWA
WAVSDVLILIFYILALRTLRHRDLREARLMIESRRDVLTQLPNRAGFDEQAMRILGDCQRAGLPAAVALFDIDHFKKIND
GWGHPAGDAVLKNLADAAQDVTRSTDAFARFGGEEFVMILKGVSAEAAFVHVERIRRAISRDVPHPSGSGRITVSAGLAD
VRTYDQAGLTAAISRADEALYAAKAAGRDRTMLAATDAATAAASA

Sequences:

>Translated_285_residues
MRLDETCFLILRLATSGLCMWAAVLSLLHAQHYVRNLRRPATLRYAGAIIVLVIGALALASGYNESIVHHGREIAVLDWA
WAVSDVLILIFYILALRTLRHRDLREARLMIESRRDVLTQLPNRAGFDEQAMRILGDCQRAGLPAAVALFDIDHFKKIND
GWGHPAGDAVLKNLADAAQDVTRSTDAFARFGGEEFVMILKGVSAEAAFVHVERIRRAISRDVPHPSGSGRITVSAGLAD
VRTYDQAGLTAAISRADEALYAAKAAGRDRTMLAATDAATAAASA
>Mature_285_residues
MRLDETCFLILRLATSGLCMWAAVLSLLHAQHYVRNLRRPATLRYAGAIIVLVIGALALASGYNESIVHHGREIAVLDWA
WAVSDVLILIFYILALRTLRHRDLREARLMIESRRDVLTQLPNRAGFDEQAMRILGDCQRAGLPAAVALFDIDHFKKIND
GWGHPAGDAVLKNLADAAQDVTRSTDAFARFGGEEFVMILKGVSAEAAFVHVERIRRAISRDVPHPSGSGRITVSAGLAD
VRTYDQAGLTAAISRADEALYAAKAAGRDRTMLAATDAATAAASA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=273, Percent_Identity=31.8681318681319, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786584, Length=205, Percent_Identity=33.6585365853659, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=37.7906976744186, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=35.4430379746835, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87082007, Length=202, Percent_Identity=35.6435643564356, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788381, Length=187, Percent_Identity=34.2245989304813, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=35.2601156069364, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788085, Length=219, Percent_Identity=29.2237442922374, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=34.1614906832298, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=32.1212121212121, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787541, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=182, Percent_Identity=28.021978021978, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 30953; Mature: 30953

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDETCFLILRLATSGLCMWAAVLSLLHAQHYVRNLRRPATLRYAGAIIVLVIGALALA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SGYNESIVHHGREIAVLDWAWAVSDVLILIFYILALRTLRHRDLREARLMIESRRDVLTQ
CCCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPNRAGFDEQAMRILGDCQRAGLPAAVALFDIDHFKKINDGWGHPAGDAVLKNLADAAQD
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VTRSTDAFARFGGEEFVMILKGVSAEAAFVHVERIRRAISRDVPHPSGSGRITVSAGLAD
HHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH
VRTYDQAGLTAAISRADEALYAAKAAGRDRTMLAATDAATAAASA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC
>Mature Secondary Structure
MRLDETCFLILRLATSGLCMWAAVLSLLHAQHYVRNLRRPATLRYAGAIIVLVIGALALA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SGYNESIVHHGREIAVLDWAWAVSDVLILIFYILALRTLRHRDLREARLMIESRRDVLTQ
CCCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPNRAGFDEQAMRILGDCQRAGLPAAVALFDIDHFKKINDGWGHPAGDAVLKNLADAAQD
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VTRSTDAFARFGGEEFVMILKGVSAEAAFVHVERIRRAISRDVPHPSGSGRITVSAGLAD
HHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH
VRTYDQAGLTAAISRADEALYAAKAAGRDRTMLAATDAATAAASA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]