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The map label for this gene is ydfH [H]

Identifier: 158424963

GI number: 158424963

Start: 3865789

End: 3866523

Strand: Direct

Name: ydfH [H]

Synonym: AZC_3339

Alternate gene names: 158424963

Gene position: 3865789-3866523 (Clockwise)

Preceding gene: 158424956

Following gene: 158424965

Centisome position: 71.99

GC content: 66.26

Gene sequence:

>735_bases
ATGCAGGCCCCACACTTGTATGGTAGTATGGACGAACTGGCAACTGGGAGAATGAACGTGGACGCCCTGAATGTGCCGAC
GACGGGATCAACGGCACAGCGCATCGAGACTGAACTGCGCCGCGCGATCATCTCCATGTCGCTGCCGCCGGGCACGCGCC
TGTCCGAGCAGGAGATCGCCACAAGCCATGGCGTGTCTCGCCAGCCGGTGCGGGAGGCGCTCATCGGCCTTGCACGCACG
CGGCTCGTGGAAATCCTGCCCCAGCGCGGCACCGTGGTGGTGAAGATCTCGACGCGCAAGATGATGGAGGCGCGGTTCGT
CCGCGAGGCCATCGAGACCGCCGTCGCCCGCAAGGCTGCCGATGCCTTCGATCCGGCGCAGCGCACGCGCATCGACGATC
TGATCGATCTCCAGTCCAAGGCGGCGCAGCGCAACGACCACGGCACCTTCCAGCGCTATGATGAACTGTTCCACGTGGCG
CTGGCGGAAGGCGCCGGCTGCGGCCTTGCCTGGGAGGCCATCAGCGACATCAAGGCCCACATGGACCGGGCGTGCCATCT
CACGCTGACCAGCGCCGAGACCATGGCCGCATTGGTGGATCAGCACCGGGCCATCATGGTTGCGGTGGACGCCCGCGATC
CTGCGGGCGCGGCGGAAGCCATGCGCTGTCACCTGAGCGAGATCCTGCGCGCCTTGCCCAAGGTCGCGCAGGAGCATCCC
GACCTGTTCGAATAG

Upstream 100 bases:

>100_bases
TCGGGTCAGCATTGGCGTTCTCCCTGAGTGATGATGTTCTTGTTGGGCCCGCATATGGTACCTCGGAACGGCGCGGGAGC
GACGGAACCGGATTCAGCGC

Downstream 100 bases:

>100_bases
GCCGGGAACGCCTCACATCACAGCGCCCACCTGCCAGGGCACGAATTCCGCATCGCCATAGCCGAGCGCCTCGGACTTCG
TGCGCTCGCCGGAAGCGGTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MQAPHLYGSMDELATGRMNVDALNVPTTGSTAQRIETELRRAIISMSLPPGTRLSEQEIATSHGVSRQPVREALIGLART
RLVEILPQRGTVVVKISTRKMMEARFVREAIETAVARKAADAFDPAQRTRIDDLIDLQSKAAQRNDHGTFQRYDELFHVA
LAEGAGCGLAWEAISDIKAHMDRACHLTLTSAETMAALVDQHRAIMVAVDARDPAGAAEAMRCHLSEILRALPKVAQEHP
DLFE

Sequences:

>Translated_244_residues
MQAPHLYGSMDELATGRMNVDALNVPTTGSTAQRIETELRRAIISMSLPPGTRLSEQEIATSHGVSRQPVREALIGLART
RLVEILPQRGTVVVKISTRKMMEARFVREAIETAVARKAADAFDPAQRTRIDDLIDLQSKAAQRNDHGTFQRYDELFHVA
LAEGAGCGLAWEAISDIKAHMDRACHLTLTSAETMAALVDQHRAIMVAVDARDPAGAAEAMRCHLSEILRALPKVAQEHP
DLFE
>Mature_244_residues
MQAPHLYGSMDELATGRMNVDALNVPTTGSTAQRIETELRRAIISMSLPPGTRLSEQEIATSHGVSRQPVREALIGLART
RLVEILPQRGTVVVKISTRKMMEARFVREAIETAVARKAADAFDPAQRTRIDDLIDLQSKAAQRNDHGTFQRYDELFHVA
LAEGAGCGLAWEAISDIKAHMDRACHLTLTSAETMAALVDQHRAIMVAVDARDPAGAAEAMRCHLSEILRALPKVAQEHP
DLFE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=216, Percent_Identity=38.4259259259259, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87081914, Length=214, Percent_Identity=23.8317757009346, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26795; Mature: 26795

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAPHLYGSMDELATGRMNVDALNVPTTGSTAQRIETELRRAIISMSLPPGTRLSEQEIA
CCCCCCCCCHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TSHGVSRQPVREALIGLARTRLVEILPQRGTVVVKISTRKMMEARFVREAIETAVARKAA
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
DAFDPAQRTRIDDLIDLQSKAAQRNDHGTFQRYDELFHVALAEGAGCGLAWEAISDIKAH
HHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MDRACHLTLTSAETMAALVDQHRAIMVAVDARDPAGAAEAMRCHLSEILRALPKVAQEHP
HHHHHEEEECHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
DLFE
CCCC
>Mature Secondary Structure
MQAPHLYGSMDELATGRMNVDALNVPTTGSTAQRIETELRRAIISMSLPPGTRLSEQEIA
CCCCCCCCCHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TSHGVSRQPVREALIGLARTRLVEILPQRGTVVVKISTRKMMEARFVREAIETAVARKAA
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
DAFDPAQRTRIDDLIDLQSKAAQRNDHGTFQRYDELFHVALAEGAGCGLAWEAISDIKAH
HHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MDRACHLTLTSAETMAALVDQHRAIMVAVDARDPAGAAEAMRCHLSEILRALPKVAQEHP
HHHHHEEEECHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
DLFE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]