Click here to switch to the map view.

The map label for this gene is kduI [H]

Identifier: 158424959

GI number: 158424959

Start: 3861842

End: 3862756

Strand: Reverse

Name: kduI [H]

Synonym: AZC_3335

Alternate gene names: 158424959

Gene position: 3862756-3861842 (Counterclockwise)

Preceding gene: 158424960

Following gene: 158424958

Centisome position: 71.94

GC content: 63.93

Gene sequence:

>915_bases
ATGCCCGGCCGGCGGCCCCGCCGGCCCGTCTTTGGCGTGCCTTGCGGCCGCCCCTTTTCCCGAAAGGTTTTCATCATGAT
GATCGACGTGCGCCAGGTCAGCCACCCGGACGCGGTGAGCGGCTATGATACGGCGGCGCTGCGCCAGCATTTTCTCGTCG
AGCGGCTGTTCGAGCCGGGCAAGGTGCTGCTCACCTACAGCCATGTGGAACGTTTCGTCATCGGCGGCGCGACGCCCCGG
AGCGACGCACTGAAGCTGGAGAGCGACAAGGCCACCATCGGTTCGCCCAATTTCCTCGACCGGCGCGAGCTGGGTGTCTT
CAACATTGGTGGCCCGGGCAAGGTGGTCGCGGACGGGGAGACCTATGTCCTCGGGCACCGCGACGCGCTCTATGTGGCGC
AGGGCACGAAGGATGTGGAATTCCTCTCGGACGATCCCGATGCACCGGCGAAATTTTATCTGCTCTCCACGCCCGCCCAT
GCCCGCTACGAGACCAAGGTGGTGAAGATTGCCGAGGCCAAGGCCATGCCGCTCGGCGATCAGGCCACCGCCAACAAGCG
CACCATCTATCAGATGATCCATCCGGACGTGGTGAAGTCCTGCCAGCTCGTCATGGGCATGACCGAGCTGGCCGAGGGCA
ACATCTGGAACACCATGCCCTGCCACGTGCATGACCGGCGCTCGGAGGTCTATCTCTATTTTGGCCTGCCGGCGGACGCC
CGCGTCGTCCATCTGATGGGCAAGCCGGAGGAGACGCGCCATCTGGTGGTGGCGGACGGTCAGGCCATCATCTCGCCTCC
GTGGTCCATCCATTCCGGCGTCGGCACCCGCGCCTACACCTTTATCTGGGGTATGGGCGGCGACAATATCGATTATACGG
ACATGGACATGGTCGCCATGGACCAGTTGCGGTGA

Upstream 100 bases:

>100_bases
TCTTCGGCGCCAGCATTGTCGTGCTGCTGCTGGTGAGCTACGTGCCCGCCGTGACGCTCTGGCTGCCTTCGCTGTTCCGC
TGAGCGCGCCGCGTCCCGAA

Downstream 100 bases:

>100_bases
GCGGGATGACCTCTCCTTTTGACCTTTCCGGCAAACGCGCCATCGTCACCGGCGCCAATACGGGCCTTGGGCAGGCGATC
GCGGTGGCCCTTGCTCAGGC

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase [H]

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MPGRRPRRPVFGVPCGRPFSRKVFIMMIDVRQVSHPDAVSGYDTAALRQHFLVERLFEPGKVLLTYSHVERFVIGGATPR
SDALKLESDKATIGSPNFLDRRELGVFNIGGPGKVVADGETYVLGHRDALYVAQGTKDVEFLSDDPDAPAKFYLLSTPAH
ARYETKVVKIAEAKAMPLGDQATANKRTIYQMIHPDVVKSCQLVMGMTELAEGNIWNTMPCHVHDRRSEVYLYFGLPADA
RVVHLMGKPEETRHLVVADGQAIISPPWSIHSGVGTRAYTFIWGMGGDNIDYTDMDMVAMDQLR

Sequences:

>Translated_304_residues
MPGRRPRRPVFGVPCGRPFSRKVFIMMIDVRQVSHPDAVSGYDTAALRQHFLVERLFEPGKVLLTYSHVERFVIGGATPR
SDALKLESDKATIGSPNFLDRRELGVFNIGGPGKVVADGETYVLGHRDALYVAQGTKDVEFLSDDPDAPAKFYLLSTPAH
ARYETKVVKIAEAKAMPLGDQATANKRTIYQMIHPDVVKSCQLVMGMTELAEGNIWNTMPCHVHDRRSEVYLYFGLPADA
RVVHLMGKPEETRHLVVADGQAIISPPWSIHSGVGTRAYTFIWGMGGDNIDYTDMDMVAMDQLR
>Mature_303_residues
PGRRPRRPVFGVPCGRPFSRKVFIMMIDVRQVSHPDAVSGYDTAALRQHFLVERLFEPGKVLLTYSHVERFVIGGATPRS
DALKLESDKATIGSPNFLDRRELGVFNIGGPGKVVADGETYVLGHRDALYVAQGTKDVEFLSDDPDAPAKFYLLSTPAHA
RYETKVVKIAEAKAMPLGDQATANKRTIYQMIHPDVVKSCQLVMGMTELAEGNIWNTMPCHVHDRRSEVYLYFGLPADAR
VVHLMGKPEETRHLVVADGQAIISPPWSIHSGVGTRAYTFIWGMGGDNIDYTDMDMVAMDQLR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family [H]

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=52.158273381295, Blast_Score=305, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120 [H]

Pfam domain/function: PF04962 KduI [H]

EC number: =5.3.1.17 [H]

Molecular weight: Translated: 33801; Mature: 33670

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRRPRRPVFGVPCGRPFSRKVFIMMIDVRQVSHPDAVSGYDTAALRQHFLVERLFEPG
CCCCCCCCCEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
KVLLTYSHVERFVIGGATPRSDALKLESDKATIGSPNFLDRRELGVFNIGGPGKVVADGE
EEEEEEEHHEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHCCCEEECCCCCCEEECCC
TYVLGHRDALYVAQGTKDVEFLSDDPDAPAKFYLLSTPAHARYETKVVKIAEAKAMPLGD
EEEEECCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCC
QATANKRTIYQMIHPDVVKSCQLVMGMTELAEGNIWNTMPCHVHDRRSEVYLYFGLPADA
CCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECCCCC
RVVHLMGKPEETRHLVVADGQAIISPPWSIHSGVGTRAYTFIWGMGGDNIDYTDMDMVAM
EEEEEECCCCHHCEEEEECCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHH
DQLR
HHCC
>Mature Secondary Structure 
PGRRPRRPVFGVPCGRPFSRKVFIMMIDVRQVSHPDAVSGYDTAALRQHFLVERLFEPG
CCCCCCCCEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
KVLLTYSHVERFVIGGATPRSDALKLESDKATIGSPNFLDRRELGVFNIGGPGKVVADGE
EEEEEEEHHEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHCCCEEECCCCCCEEECCC
TYVLGHRDALYVAQGTKDVEFLSDDPDAPAKFYLLSTPAHARYETKVVKIAEAKAMPLGD
EEEEECCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCC
QATANKRTIYQMIHPDVVKSCQLVMGMTELAEGNIWNTMPCHVHDRRSEVYLYFGLPADA
CCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECCCCC
RVVHLMGKPEETRHLVVADGQAIISPPWSIHSGVGTRAYTFIWGMGGDNIDYTDMDMVAM
EEEEEECCCCHHCEEEEECCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHH
DQLR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA