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The map label for this gene is yafK [H]

Identifier: 158424938

GI number: 158424938

Start: 3837726

End: 3839003

Strand: Reverse

Name: yafK [H]

Synonym: AZC_3314

Alternate gene names: 158424938

Gene position: 3839003-3837726 (Counterclockwise)

Preceding gene: 158424939

Following gene: 158424937

Centisome position: 71.49

GC content: 68.0

Gene sequence:

>1278_bases
GTGTTGAGCCGTCCGCTTGCCATCCTCTCCCGCGTGCGCCTTGCGGCCCTTGCCGCCGTCGCCGCGCTTGCGCTTGCGGC
CTGCAATGGCCAGGGCAACGATGTCTCGGCCAAGGCCAACCAGCCGCTGTCGCCCAAGATGATCTCGCTCATGTCCGAGA
AGGACATGGCGCCGCAGAACCCGATTCTCATCCGCGTCTTCAAGGAAGAGGCGGAGCTGGAGGTCTGGAAGGCGAAGAAT
GACGGCAGCTACGCGCTGCTGAAGACCTATCCCATCTGCCGCTGGTCCGGCGAACTGGGGCCGAAGGTCAAGATCGGCGA
CCGTCAGGCGCCCGAGGGGTTCTATATGATCACCCCCGGCCTGATGAACCCGAACTCCAGCTACTACCTTTCCATCAACA
CCGGCTTCCCCAATGCCTTCGACAAGTCGTGGGGCCGCACCGGCGAATTCCTGATGATCCACGGCGATTGCTCGTCGGCC
GGCTGCTACGCCATGACGGACGAGCAGATCGCGGAGATCTTCGCGCTGGCCCGCGAGGCGTTTGCCGGCGGACAGCGGGC
GTTCCAGATCCAGGCCATGCCCTTCCGCATGACGCCGCAGAATCTGGCCCGCCACCGCAACAATCCGAACATGGCCTTCT
GGCGCAACCTGAAGCAGGGCTACGACCACTTCGAGGTGACGAAGCACGAGCCGAAGGTGAACGTCTGCAACCGGCAGTAC
GTTTTCGATGCCCAGCTGCAGCCCGGCCAGGCCTTCAACCCATCCGCGCCGTGCCCGGCCTATACGGTGGCCCCGGAGAT
CGCGAGCGCGGTGGGCGCCAAGGAGCGCTCCGACAATCTGAAGGTGGCGGAGCTCTCGTCCAACACGCCGCTCGCGCCCG
TGCGCACCGGCCGCGATGGCGGCATGAACCCGGTGTTCCTCGCCAAGCTCAATGGCGAGGACAATGCCCCCGCCCGCATG
GCTTATGGGCAGGACAATGTGCCGGCCTTCGATCCCGCGAACGTCCGCCCGCCCAAGGCGGATGGCGAGGTCGTCGCCGC
GCCCGTGCGGCCCGGCGCGCCGGCGGCCACGCCGGCTCCGGCGCCCGTCGCATCCGCGCCGGCGCGGGCCGCGAGCACGC
CCTATCCCAACGGGACGGCTGCGCCGACGGCCGGCAGCACCTCCTCGCTCTACACGCGCGCCACCACCCAGACGGCCAGT
GCCGATACGGGCGTCGCGCAGGCTTCTGCTCTCATGGGGGCGGCCCCCATCGTGGGAAGCGGCGGCTTCGGCAACTGA

Upstream 100 bases:

>100_bases
TCGACCTCGAGGGTTCTCCCATCTTGCGGCGGTCAGGCCGTAAGGCTAGAGAACTTTCAGAACTGTCGCTCACCGCGCCC
GGATCGGACCCAGGAGTTCC

Downstream 100 bases:

>100_bases
GCCGCTCTTCCGAAGAGAGCTTCAAAAAGCCCGGCGCGCCCTCGGCCGCCGGGCTTTTTCGTGCGCGTGCGGCCTGCTCC
CGTTACCGCCGCAATGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MLSRPLAILSRVRLAALAAVAALALAACNGQGNDVSAKANQPLSPKMISLMSEKDMAPQNPILIRVFKEEAELEVWKAKN
DGSYALLKTYPICRWSGELGPKVKIGDRQAPEGFYMITPGLMNPNSSYYLSINTGFPNAFDKSWGRTGEFLMIHGDCSSA
GCYAMTDEQIAEIFALAREAFAGGQRAFQIQAMPFRMTPQNLARHRNNPNMAFWRNLKQGYDHFEVTKHEPKVNVCNRQY
VFDAQLQPGQAFNPSAPCPAYTVAPEIASAVGAKERSDNLKVAELSSNTPLAPVRTGRDGGMNPVFLAKLNGEDNAPARM
AYGQDNVPAFDPANVRPPKADGEVVAAPVRPGAPAATPAPAPVASAPARAASTPYPNGTAAPTAGSTSSLYTRATTQTAS
ADTGVAQASALMGAAPIVGSGGFGN

Sequences:

>Translated_425_residues
MLSRPLAILSRVRLAALAAVAALALAACNGQGNDVSAKANQPLSPKMISLMSEKDMAPQNPILIRVFKEEAELEVWKAKN
DGSYALLKTYPICRWSGELGPKVKIGDRQAPEGFYMITPGLMNPNSSYYLSINTGFPNAFDKSWGRTGEFLMIHGDCSSA
GCYAMTDEQIAEIFALAREAFAGGQRAFQIQAMPFRMTPQNLARHRNNPNMAFWRNLKQGYDHFEVTKHEPKVNVCNRQY
VFDAQLQPGQAFNPSAPCPAYTVAPEIASAVGAKERSDNLKVAELSSNTPLAPVRTGRDGGMNPVFLAKLNGEDNAPARM
AYGQDNVPAFDPANVRPPKADGEVVAAPVRPGAPAATPAPAPVASAPARAASTPYPNGTAAPTAGSTSSLYTRATTQTAS
ADTGVAQASALMGAAPIVGSGGFGN
>Mature_425_residues
MLSRPLAILSRVRLAALAAVAALALAACNGQGNDVSAKANQPLSPKMISLMSEKDMAPQNPILIRVFKEEAELEVWKAKN
DGSYALLKTYPICRWSGELGPKVKIGDRQAPEGFYMITPGLMNPNSSYYLSINTGFPNAFDKSWGRTGEFLMIHGDCSSA
GCYAMTDEQIAEIFALAREAFAGGQRAFQIQAMPFRMTPQNLARHRNNPNMAFWRNLKQGYDHFEVTKHEPKVNVCNRQY
VFDAQLQPGQAFNPSAPCPAYTVAPEIASAVGAKERSDNLKVAELSSNTPLAPVRTGRDGGMNPVFLAKLNGEDNAPARM
AYGQDNVPAFDPANVRPPKADGEVVAAPVRPGAPAATPAPAPVASAPARAASTPYPNGTAAPTAGSTSSLYTRATTQTAS
ADTGVAQASALMGAAPIVGSGGFGN

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=257, Percent_Identity=39.6887159533074, Blast_Score=192, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 44986; Mature: 44986

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRPLAILSRVRLAALAAVAALALAACNGQGNDVSAKANQPLSPKMISLMSEKDMAPQN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
PILIRVFKEEAELEVWKAKNDGSYALLKTYPICRWSGELGPKVKIGDRQAPEGFYMITPG
CEEEEEECCCCCEEEEEECCCCCEEEEEECCEEEECCCCCCEEEECCCCCCCCEEEECCC
LMNPNSSYYLSINTGFPNAFDKSWGRTGEFLMIHGDCSSAGCYAMTDEQIAEIFALAREA
CCCCCCCEEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHH
FAGGQRAFQIQAMPFRMTPQNLARHRNNPNMAFWRNLKQGYDHFEVTKHEPKVNVCNRQY
HCCCCEEEEEEECCEEECHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCEEECCEEE
VFDAQLQPGQAFNPSAPCPAYTVAPEIASAVGAKERSDNLKVAELSSNTPLAPVRTGRDG
EEECCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCC
GMNPVFLAKLNGEDNAPARMAYGQDNVPAFDPANVRPPKADGEVVAAPVRPGAPAATPAP
CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
APVASAPARAASTPYPNGTAAPTAGSTSSLYTRATTQTASADTGVAQASALMGAAPIVGS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEECC
GGFGN
CCCCC
>Mature Secondary Structure
MLSRPLAILSRVRLAALAAVAALALAACNGQGNDVSAKANQPLSPKMISLMSEKDMAPQN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
PILIRVFKEEAELEVWKAKNDGSYALLKTYPICRWSGELGPKVKIGDRQAPEGFYMITPG
CEEEEEECCCCCEEEEEECCCCCEEEEEECCEEEECCCCCCEEEECCCCCCCCEEEECCC
LMNPNSSYYLSINTGFPNAFDKSWGRTGEFLMIHGDCSSAGCYAMTDEQIAEIFALAREA
CCCCCCCEEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHH
FAGGQRAFQIQAMPFRMTPQNLARHRNNPNMAFWRNLKQGYDHFEVTKHEPKVNVCNRQY
HCCCCEEEEEEECCEEECHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCEEECCEEE
VFDAQLQPGQAFNPSAPCPAYTVAPEIASAVGAKERSDNLKVAELSSNTPLAPVRTGRDG
EEECCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCC
GMNPVFLAKLNGEDNAPARMAYGQDNVPAFDPANVRPPKADGEVVAAPVRPGAPAATPAP
CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
APVASAPARAASTPYPNGTAAPTAGSTSSLYTRATTQTASADTGVAQASALMGAAPIVGS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEECC
GGFGN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]