Click here to switch to the map view.

The map label for this gene is gntR [H]

Identifier: 158424920

GI number: 158424920

Start: 3807521

End: 3808195

Strand: Reverse

Name: gntR [H]

Synonym: AZC_3296

Alternate gene names: 158424920

Gene position: 3808195-3807521 (Counterclockwise)

Preceding gene: 158424926

Following gene: 158424915

Centisome position: 70.92

GC content: 71.11

Gene sequence:

>675_bases
ATGCGTGGCGAGGCGACCCCGCGGCTGCGGGAGGCCCTGGAAGACGACATCGTGTCGGGCCGGCTGAAGCCGGGCCAGCG
GCTCGACGAGGTGGGCCTCGCCGAGCGCTTCGACGTCTCCCGCACGCCCATCCGCGAAGCCCTGATCCAGCTTGCCGCCT
CCGGAATGGTGGAGATCCGGCCGCGCCGAGGTGCTTTCGTGGCCTTGCTGGGGCCGCGCGAACTCATCGAGAGTTTCGAG
CTGATGGCCGAGATCGAGGCCGCCTGTGGCCGCCTCGCCGCCCGCCGCATGACTGCCGAGGATCGAGCCGCCATCGAAGC
CGCACACGCTGATTGCGCCGCCGCCGTCCGCGCCGGGGATCGCGAGACCTATTACAGCGAGAACGCCCGCTTTCATGCCG
CCATCTATGCGGCGACGGGCAACCGTGTGCTGGCGGGCGAGGCCCAGCGCCACCAGCGCCTGCTTCAGCCCTACCGGCGC
CTGCAACTGCGCGTGCCGCGCCGGATGGACGCCTCGTTTGCGGAGCACGAAGCCATTCTGGCAGCACTGCTTGCCGGCGA
GGGCGACGTCGCCGCCGAGCGGCTGCGGGCCCATGTGTTGGTGCAGGGCGAGCGCTTCCTGAACCTCATCGCGGCGCTTC
AGGACGAGACCGAGGCCGTCGCGCGTGCCGGCTGA

Upstream 100 bases:

>100_bases
CAGGGTCACCCTTGCGTCGGTTCTATGAAGGGGCGACTTGCATCCGATGTCAATAATCATGTATGCAAGATTTTGTAACT
TGCATTGGCGAGGCGTTCCG

Downstream 100 bases:

>100_bases
GGCGCGTTAGCTGCCCAGCGCGGTATCCACCAGCAGCTTCACATTGAGCGCGATGATGAGGAGGCTCGCGGCGGCGGCCA
GAACCGTCTGCCAGCGGGGC

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRGEATPRLREALEDDIVSGRLKPGQRLDEVGLAERFDVSRTPIREALIQLAASGMVEIRPRRGAFVALLGPRELIESFE
LMAEIEAACGRLAARRMTAEDRAAIEAAHADCAAAVRAGDRETYYSENARFHAAIYAATGNRVLAGEAQRHQRLLQPYRR
LQLRVPRRMDASFAEHEAILAALLAGEGDVAAERLRAHVLVQGERFLNLIAALQDETEAVARAG

Sequences:

>Translated_224_residues
MRGEATPRLREALEDDIVSGRLKPGQRLDEVGLAERFDVSRTPIREALIQLAASGMVEIRPRRGAFVALLGPRELIESFE
LMAEIEAACGRLAARRMTAEDRAAIEAAHADCAAAVRAGDRETYYSENARFHAAIYAATGNRVLAGEAQRHQRLLQPYRR
LQLRVPRRMDASFAEHEAILAALLAGEGDVAAERLRAHVLVQGERFLNLIAALQDETEAVARAG
>Mature_224_residues
MRGEATPRLREALEDDIVSGRLKPGQRLDEVGLAERFDVSRTPIREALIQLAASGMVEIRPRRGAFVALLGPRELIESFE
LMAEIEAACGRLAARRMTAEDRAAIEAAHADCAAAVRAGDRETYYSENARFHAAIYAATGNRVLAGEAQRHQRLLQPYRR
LQLRVPRRMDASFAEHEAILAALLAGEGDVAAERLRAHVLVQGERFLNLIAALQDETEAVARAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=199, Percent_Identity=30.1507537688442, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1787821, Length=117, Percent_Identity=31.6239316239316, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081914, Length=140, Percent_Identity=30.7142857142857, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI48994961, Length=210, Percent_Identity=30, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24631; Mature: 24631

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGEATPRLREALEDDIVSGRLKPGQRLDEVGLAERFDVSRTPIREALIQLAASGMVEIR
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCEEEE
PRRGAFVALLGPRELIESFELMAEIEAACGRLAARRMTAEDRAAIEAAHADCAAAVRAGD
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
RETYYSENARFHAAIYAATGNRVLAGEAQRHQRLLQPYRRLQLRVPRRMDASFAEHEAIL
CHHHHCCCCEEEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHH
AALLAGEGDVAAERLRAHVLVQGERFLNLIAALQDETEAVARAG
HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRGEATPRLREALEDDIVSGRLKPGQRLDEVGLAERFDVSRTPIREALIQLAASGMVEIR
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCEEEE
PRRGAFVALLGPRELIESFELMAEIEAACGRLAARRMTAEDRAAIEAAHADCAAAVRAGD
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
RETYYSENARFHAAIYAATGNRVLAGEAQRHQRLLQPYRRLQLRVPRRMDASFAEHEAIL
CHHHHCCCCEEEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHH
AALLAGEGDVAAERLRAHVLVQGERFLNLIAALQDETEAVARAG
HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]