| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is namA [H]
Identifier: 158424814
GI number: 158424814
Start: 3647518
End: 3649827
Strand: Reverse
Name: namA [H]
Synonym: AZC_3190
Alternate gene names: 158424814
Gene position: 3649827-3647518 (Counterclockwise)
Preceding gene: 158424832
Following gene: 158424813
Centisome position: 67.97
GC content: 66.36
Gene sequence:
>2310_bases ATGCGCATCGTCTGCATTGGTGGCGGCCCTGCGGGCCTCTATTTCGGCCTCCTCATGAAGAAGCTGCACCCCGCGCACCA GATCACGGTGGTGGAGCGCAACAAGCCCTATGACACGTTCGGTTGGGGCGTCGTCTTCTCCGACGCGACCATGGCGGCCA TGCGGGTCTGGGACCCGGAGACCGCGACCGAGATCGAGGATGCGTTCAACCACTGGGACGACATTGAGGTCTGGTTCAAG GGCACCCGCCAGCGCACCTCCGGCCATGGCTTCGTCGGTATCGGCCGCAAGGCGCTGCTCAACATCCTCCAGCGCCGGTG CGAGGCGCTCGGCGTCGAACTGGTGTTCGAGCGCGACGTCGAGAGCGACCTCGATTTTCCCGATGCCGACCTCATCATCG CCTCGGACGGCATCAATTCCAGGATCCGCAACCGTTATGCGGAGGCCTTCCAGCCAGATCTCGTCGTGCGCCCGAACCGC TACATCTGGCTCGGCACGAAAAAGCTCTATGACGCCTTCACCTTCGACTTTCGCAAGACCGAGCACGGCTGGTTCCAGGC TCACATCTACAAGTTCGATGCGCACACCTCGACCTTCATCATCGAGACGACGGAAGAGGCCTATCAGGCCCATGGGCTCG GGGAGCTGGATCAGGACGGCTCCATCGCCTTCTGCGAGAAGCTGTTTTCCGAGGTGCTCGACGGCGCCCCGCTGATGACC AATGCGCGCCACCTGCGCGGCTCGGCCTGGCTGAACTTCAACCGGCTGATCTGCGGCAAGTGGAGCCACTTCAACGGCCG CTCCCATGTGGTGCTCATGGGGGATGCCGCGCATACCGCCCACTTCGCCATCGGCTCCGGCACCAAGCTCGCCATTGATG ACGCCATCGAGCTTGCCAGGCAGTTCAACGAGATCGGCCACGGCGTGGAGACGATCCCGTCCGTGCTCTCGGTCTATGAG GAGATCCGCCGCGTCGATGTGGCCCGCATCCAGAATGCGGCCCGCAACGCCATGGAATGGTTCGAGGTGGTCGGCCGCCG CTATGCCGACAGCCTGGAGCCGGAGCAGTTCATGTATTCCATGCTGACGCGCTCCCAGCGCATCAGCCACGAGAACTTGC GCCTGCGCGACCGCGCGTGGCTGGAGGGTTATGAGCGCTGGTTCGCGCGCCGCGCCGGCCTGCCCGTGGAGACCAACGGC CGCGTGACGCCGCCCATGTTCACGCCCTACCGCCTGCGGGACGTGACGCTGCCCAACCGCATCGTCGTTTCTCCCATGGC CATGTACTCGGCGACGGACGGCGTGCTCGGCGACTTCCATCTCGTCCATCTCGGCGCCCGTGCCATGGGCGGCGCGGGGC TCGTCTTCGCCGAAATGACCTGCGTGTCGCCGGATGCACGGATCACCCCCGGCTGTCTCGGCCTGTGGGACGACGGGCAG ATCGAGGGCTGGAAGCGGTTCGTCGATTTCGTCCATGCCAACACGGGCGCCAAGGTGGCCTGCCAGCTCGGCCACGCCGG GCGCAAAGGCGCCACCAAGCGCGCGTGGGAGGGCATCGACCAGCCGCTGGAAGAGGACGGCTGGCCGCTGATTTCCGCCT CGGCCCTGCCGTACCTCAAGCACAGCCAGGTGCCGAAGGCGATGGACCGCGCCGACATGGATCGCGTCGTCGCCGATTTC GTGGCCGCCACCCGGCGCGCGGCGGCGGCGGGCGTGGACTGGCTGGAGCTCCATGCCGCGCACGGCTATCTGCTGTCGAG CTTCCTCTCGCCGCTCACCAACCGGCGCACGGACGACTATGGCGGCTCGCACGCAGCCCGCGCCCGCTTCCCGCTCGAAG TGTTCCGGGCCATCCGCGCTGTGTGGCCGGCGGAGCGGCCGATCTCCGTGCGCCTGTCCTGTCATGACTGGACCGAGGGC GGCAACACGCCGGAGGATGCCGCCATCTTCGCCACCATGTTCAAGGAGGCGGGTGCCGATCTCATCGACTGTTCGTCCGG GCAGGTATGGAAGGAGGAGCGGCCGGTCTATGGCCGGCTGTTCCAGACCCCATTCTCCGACAAGATCCGAAACGAGGTGG GCATTCCCACCATTGCCGTCGGCGCCATCTCGGAAGCCGATCACGCCAATTCCATCATCGCGGCGGGGCGTGCGGACCTC TGCGCCATTGCCCGGCCGCATCTGGCCGACCCCGCTTGGTCGCTGCACGAGGCGGCGAAGATCGGCCTGAAGACGGTGCC CTGGCCCAAGCAGTATGCCTCCGCCAAGGGCCAGTATGAGGCCAATCTCGAACGCGCATCGGCGCAGTGA
Upstream 100 bases:
>100_bases GCGAGCCTGATCCGGTTGACAGGCGCGCGAAAGCTCCATTACTTTAACTTTAAAGCAATTCGCGCGGCACGTCGCGTGCC CGTCGAGGGGGAAGAACTCC
Downstream 100 bases:
>100_bases GGGACGCAATGGGCGATCTCGACGCCATCGCGGGCCGCCACGTCCTCGTCACCGGCGCGGGCTCGGGCATCGGCGCTTCC GTTGCGCGCCGTCTCGGCCG
Product: salicylyl-CoA 5-hydroxylase
Products: NA
Alternate protein names: Xenobiotic reductase [H]
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MRIVCIGGGPAGLYFGLLMKKLHPAHQITVVERNKPYDTFGWGVVFSDATMAAMRVWDPETATEIEDAFNHWDDIEVWFK GTRQRTSGHGFVGIGRKALLNILQRRCEALGVELVFERDVESDLDFPDADLIIASDGINSRIRNRYAEAFQPDLVVRPNR YIWLGTKKLYDAFTFDFRKTEHGWFQAHIYKFDAHTSTFIIETTEEAYQAHGLGELDQDGSIAFCEKLFSEVLDGAPLMT NARHLRGSAWLNFNRLICGKWSHFNGRSHVVLMGDAAHTAHFAIGSGTKLAIDDAIELARQFNEIGHGVETIPSVLSVYE EIRRVDVARIQNAARNAMEWFEVVGRRYADSLEPEQFMYSMLTRSQRISHENLRLRDRAWLEGYERWFARRAGLPVETNG RVTPPMFTPYRLRDVTLPNRIVVSPMAMYSATDGVLGDFHLVHLGARAMGGAGLVFAEMTCVSPDARITPGCLGLWDDGQ IEGWKRFVDFVHANTGAKVACQLGHAGRKGATKRAWEGIDQPLEEDGWPLISASALPYLKHSQVPKAMDRADMDRVVADF VAATRRAAAAGVDWLELHAAHGYLLSSFLSPLTNRRTDDYGGSHAARARFPLEVFRAIRAVWPAERPISVRLSCHDWTEG GNTPEDAAIFATMFKEAGADLIDCSSGQVWKEERPVYGRLFQTPFSDKIRNEVGIPTIAVGAISEADHANSIIAAGRADL CAIARPHLADPAWSLHEAAKIGLKTVPWPKQYASAKGQYEANLERASAQ
Sequences:
>Translated_769_residues MRIVCIGGGPAGLYFGLLMKKLHPAHQITVVERNKPYDTFGWGVVFSDATMAAMRVWDPETATEIEDAFNHWDDIEVWFK GTRQRTSGHGFVGIGRKALLNILQRRCEALGVELVFERDVESDLDFPDADLIIASDGINSRIRNRYAEAFQPDLVVRPNR YIWLGTKKLYDAFTFDFRKTEHGWFQAHIYKFDAHTSTFIIETTEEAYQAHGLGELDQDGSIAFCEKLFSEVLDGAPLMT NARHLRGSAWLNFNRLICGKWSHFNGRSHVVLMGDAAHTAHFAIGSGTKLAIDDAIELARQFNEIGHGVETIPSVLSVYE EIRRVDVARIQNAARNAMEWFEVVGRRYADSLEPEQFMYSMLTRSQRISHENLRLRDRAWLEGYERWFARRAGLPVETNG RVTPPMFTPYRLRDVTLPNRIVVSPMAMYSATDGVLGDFHLVHLGARAMGGAGLVFAEMTCVSPDARITPGCLGLWDDGQ IEGWKRFVDFVHANTGAKVACQLGHAGRKGATKRAWEGIDQPLEEDGWPLISASALPYLKHSQVPKAMDRADMDRVVADF VAATRRAAAAGVDWLELHAAHGYLLSSFLSPLTNRRTDDYGGSHAARARFPLEVFRAIRAVWPAERPISVRLSCHDWTEG GNTPEDAAIFATMFKEAGADLIDCSSGQVWKEERPVYGRLFQTPFSDKIRNEVGIPTIAVGAISEADHANSIIAAGRADL CAIARPHLADPAWSLHEAAKIGLKTVPWPKQYASAKGQYEANLERASAQ >Mature_769_residues MRIVCIGGGPAGLYFGLLMKKLHPAHQITVVERNKPYDTFGWGVVFSDATMAAMRVWDPETATEIEDAFNHWDDIEVWFK GTRQRTSGHGFVGIGRKALLNILQRRCEALGVELVFERDVESDLDFPDADLIIASDGINSRIRNRYAEAFQPDLVVRPNR YIWLGTKKLYDAFTFDFRKTEHGWFQAHIYKFDAHTSTFIIETTEEAYQAHGLGELDQDGSIAFCEKLFSEVLDGAPLMT NARHLRGSAWLNFNRLICGKWSHFNGRSHVVLMGDAAHTAHFAIGSGTKLAIDDAIELARQFNEIGHGVETIPSVLSVYE EIRRVDVARIQNAARNAMEWFEVVGRRYADSLEPEQFMYSMLTRSQRISHENLRLRDRAWLEGYERWFARRAGLPVETNG RVTPPMFTPYRLRDVTLPNRIVVSPMAMYSATDGVLGDFHLVHLGARAMGGAGLVFAEMTCVSPDARITPGCLGLWDDGQ IEGWKRFVDFVHANTGAKVACQLGHAGRKGATKRAWEGIDQPLEEDGWPLISASALPYLKHSQVPKAMDRADMDRVVADF VAATRRAAAAGVDWLELHAAHGYLLSSFLSPLTNRRTDDYGGSHAARARFPLEVFRAIRAVWPAERPISVRLSCHDWTEG GNTPEDAAIFATMFKEAGADLIDCSSGQVWKEERPVYGRLFQTPFSDKIRNEVGIPTIAVGAISEADHANSIIAAGRADL CAIARPHLADPAWSLHEAAKIGLKTVPWPKQYASAKGQYEANLERASAQ
Specific function: Catalyzes the reduction of the double bond of an array of alpha, beta-unsaturated aldehydes and ketones. It also reduces the nitro group of nitroester and nitroaromatic compounds. It could have a role in detoxification processes [H]
COG id: COG0654
COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NADH:flavin oxidoreductase/NADH oxidase family. NamA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787939, Length=344, Percent_Identity=29.9418604651163, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1789463, Length=339, Percent_Identity=29.7935103244838, Blast_Score=112, Evalue=7e-26, Organism=Caenorhabditis elegans, GI72001454, Length=297, Percent_Identity=28.6195286195286, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17559804, Length=298, Percent_Identity=26.8456375838926, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17564188, Length=298, Percent_Identity=26.510067114094, Blast_Score=99, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17565138, Length=298, Percent_Identity=27.8523489932886, Blast_Score=99, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17559802, Length=232, Percent_Identity=30.1724137931034, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17540738, Length=258, Percent_Identity=29.0697674418605, Blast_Score=86, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17566914, Length=275, Percent_Identity=26.5454545454545, Blast_Score=77, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6325086, Length=266, Percent_Identity=29.6992481203008, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6321973, Length=243, Percent_Identity=30.8641975308642, Blast_Score=100, Evalue=6e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001155 [H]
Pfam domain/function: PF00724 Oxidored_FMN [H]
EC number: =1.6.99.1 [H]
Molecular weight: Translated: 85810; Mature: 85810
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIVCIGGGPAGLYFGLLMKKLHPAHQITVVERNKPYDTFGWGVVFSDATMAAMRVWDPE CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCHHEEHHEECCCC TATEIEDAFNHWDDIEVWFKGTRQRTSGHGFVGIGRKALLNILQRRCEALGVELVFERDV HHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCEEEEEECCC ESDLDFPDADLIIASDGINSRIRNRYAEAFQPDLVVRPNRYIWLGTKKLYDAFTFDFRKT CCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCEEEECCHHHHHHHHHCCCCC EHGWFQAHIYKFDAHTSTFIIETTEEAYQAHGLGELDQDGSIAFCEKLFSEVLDGAPLMT CCCEEEEEEEEEECCCEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC NARHLRGSAWLNFNRLICGKWSHFNGRSHVVLMGDAAHTAHFAIGSGTKLAIDDAIELAR CHHHHCCCEEEEECEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEHHHHHHHHH QFNEIGHGVETIPSVLSVYEEIRRVDVARIQNAARNAMEWFEVVGRRYADSLEPEQFMYS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH MLTRSQRISHENLRLRDRAWLEGYERWFARRAGLPVETNGRVTPPMFTPYRLRDVTLPNR HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCE IVVSPMAMYSATDGVLGDFHLVHLGARAMGGAGLVFAEMTCVSPDARITPGCLGLWDDGQ EEECCHHHHHCCCCCCCCCHHEEHHHHHCCCCCEEEEEEEECCCCCCCCCCEEECCCCCC IEGWKRFVDFVHANTGAKVACQLGHAGRKGATKRAWEGIDQPLEEDGWPLISASALPYLK HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCEEECCCCCCHH HSQVPKAMDRADMDRVVADFVAATRRAAAAGVDWLELHAAHGYLLSSFLSPLTNRRTDDY HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC GGSHAARARFPLEVFRAIRAVWPAERPISVRLSCHDWTEGGNTPEDAAIFATMFKEAGAD CCCCCHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC LIDCSSGQVWKEERPVYGRLFQTPFSDKIRNEVGIPTIAVGAISEADHANSIIAAGRADL EEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCCCH CAIARPHLADPAWSLHEAAKIGLKTVPWPKQYASAKGQYEANLERASAQ HHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCHHCHHHCCCC >Mature Secondary Structure MRIVCIGGGPAGLYFGLLMKKLHPAHQITVVERNKPYDTFGWGVVFSDATMAAMRVWDPE CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCHHEEHHEECCCC TATEIEDAFNHWDDIEVWFKGTRQRTSGHGFVGIGRKALLNILQRRCEALGVELVFERDV HHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCEEEEEECCC ESDLDFPDADLIIASDGINSRIRNRYAEAFQPDLVVRPNRYIWLGTKKLYDAFTFDFRKT CCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCEEEECCHHHHHHHHHCCCCC EHGWFQAHIYKFDAHTSTFIIETTEEAYQAHGLGELDQDGSIAFCEKLFSEVLDGAPLMT CCCEEEEEEEEEECCCEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC NARHLRGSAWLNFNRLICGKWSHFNGRSHVVLMGDAAHTAHFAIGSGTKLAIDDAIELAR CHHHHCCCEEEEECEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEHHHHHHHHH QFNEIGHGVETIPSVLSVYEEIRRVDVARIQNAARNAMEWFEVVGRRYADSLEPEQFMYS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH MLTRSQRISHENLRLRDRAWLEGYERWFARRAGLPVETNGRVTPPMFTPYRLRDVTLPNR HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCE IVVSPMAMYSATDGVLGDFHLVHLGARAMGGAGLVFAEMTCVSPDARITPGCLGLWDDGQ EEECCHHHHHCCCCCCCCCHHEEHHHHHCCCCCEEEEEEEECCCCCCCCCCEEECCCCCC IEGWKRFVDFVHANTGAKVACQLGHAGRKGATKRAWEGIDQPLEEDGWPLISASALPYLK HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCEEECCCCCCHH HSQVPKAMDRADMDRVVADFVAATRRAAAAGVDWLELHAAHGYLLSSFLSPLTNRRTDDY HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC GGSHAARARFPLEVFRAIRAVWPAERPISVRLSCHDWTEGGNTPEDAAIFATMFKEAGAD CCCCCHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC LIDCSSGQVWKEERPVYGRLFQTPFSDKIRNEVGIPTIAVGAISEADHANSIIAAGRADL EEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCCCH CAIARPHLADPAWSLHEAAKIGLKTVPWPKQYASAKGQYEANLERASAQ HHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCHHCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA