Click here to switch to the map view.

The map label for this gene is ycaC [H]

Identifier: 158424725

GI number: 158424725

Start: 3550983

End: 3551636

Strand: Reverse

Name: ycaC [H]

Synonym: AZC_3101

Alternate gene names: 158424725

Gene position: 3551636-3550983 (Counterclockwise)

Preceding gene: 158424731

Following gene: 158424724

Centisome position: 66.14

GC content: 65.6

Gene sequence:

>654_bases
ATGACCCCCCAGGCCACTCCCACGCCCTCTCCGCTGCTCATCACCCCCACCGATCATGCGCTGATCATGATCGACTTCCA
GTCGCAGATGTCGTTTGCGACGAAGTCCATCGACGCTGTGCTCCTGCGCAACAATGCGGCGCTCGTCGCCCGCGCCGCCG
CCAGCTTCGGCGTGCCCTCCATCCTCACCACGGTGGCCGAGCGCAGCTTCTCCGGCCCCATGTATGAAGAGATCACCAGC
GCCTTCCCGGGGCAGGCCCTGATCGACCGCACCTCCATGAACACCTGGGAAGACGCCAACGTCATCAAGGTGGTCAACCA
GATCGGCAAGCCGCGCCTTGTCATGTGCGGCCTGTGGACCTCGGTCTGCATCGTCGGCCCGTCCCTGTCGGCCATCGCCC
AGGGCTTCGAGGTCTATGTGATCGCCGATGCCTGCGGCGACGTCACCGACGAGGCCCACGAGCGCGCCATGGAGCGCATG
GTGCAGGCCGGCGTGCGCCCCATGACCTCGCTGCAGTATCTGCTCGAACTCCAGCGCGACTGGGCTCGCACCGAGACTTA
CGAGTCCACCACCGGCATCGCCAAGCAGTTTGGCGGCTCCTATGGCCTCGGCATCATCTACGCCAAGACCATGTTCGGCG
CCCACGAGGGCTGA

Upstream 100 bases:

>100_bases
CATGGGCATCCCGTTCAAAAGGCCAGCAGACCCGACAAGACCGGATGGACGGGCAGGGGCAGTTTGGCGCCGCATTTCCA
ATCTTGCGGCAGGACCCATC

Downstream 100 bases:

>100_bases
CGCGGCCACGGCGCGGAGGGAGCGCGATGAAGATCTATGTTGTGTCTCTCGCCGCGGGCCTGCTGGTCGGCGTCATCTAC
GGCCTGCTGAACGTGCGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTPQATPTPSPLLITPTDHALIMIDFQSQMSFATKSIDAVLLRNNAALVARAAASFGVPSILTTVAERSFSGPMYEEITS
AFPGQALIDRTSMNTWEDANVIKVVNQIGKPRLVMCGLWTSVCIVGPSLSAIAQGFEVYVIADACGDVTDEAHERAMERM
VQAGVRPMTSLQYLLELQRDWARTETYESTTGIAKQFGGSYGLGIIYAKTMFGAHEG

Sequences:

>Translated_217_residues
MTPQATPTPSPLLITPTDHALIMIDFQSQMSFATKSIDAVLLRNNAALVARAAASFGVPSILTTVAERSFSGPMYEEITS
AFPGQALIDRTSMNTWEDANVIKVVNQIGKPRLVMCGLWTSVCIVGPSLSAIAQGFEVYVIADACGDVTDEAHERAMERM
VQAGVRPMTSLQYLLELQRDWARTETYESTTGIAKQFGGSYGLGIIYAKTMFGAHEG
>Mature_216_residues
TPQATPTPSPLLITPTDHALIMIDFQSQMSFATKSIDAVLLRNNAALVARAAASFGVPSILTTVAERSFSGPMYEEITSA
FPGQALIDRTSMNTWEDANVIKVVNQIGKPRLVMCGLWTSVCIVGPSLSAIAQGFEVYVIADACGDVTDEAHERAMERMV
QAGVRPMTSLQYLLELQRDWARTETYESTTGIAKQFGGSYGLGIIYAKTMFGAHEG

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=169, Percent_Identity=33.7278106508876, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 23473; Mature: 23342

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPQATPTPSPLLITPTDHALIMIDFQSQMSFATKSIDAVLLRNNAALVARAAASFGVPS
CCCCCCCCCCCEEEECCCCEEEEEECHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHH
ILTTVAERSFSGPMYEEITSAFPGQALIDRTSMNTWEDANVIKVVNQIGKPRLVMCGLWT
HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEHHH
SVCIVGPSLSAIAQGFEVYVIADACGDVTDEAHERAMERMVQAGVRPMTSLQYLLELQRD
HHHHHCCCHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
WARTETYESTTGIAKQFGGSYGLGIIYAKTMFGAHEG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPQATPTPSPLLITPTDHALIMIDFQSQMSFATKSIDAVLLRNNAALVARAAASFGVPS
CCCCCCCCCCEEEECCCCEEEEEECHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHH
ILTTVAERSFSGPMYEEITSAFPGQALIDRTSMNTWEDANVIKVVNQIGKPRLVMCGLWT
HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEHHH
SVCIVGPSLSAIAQGFEVYVIADACGDVTDEAHERAMERMVQAGVRPMTSLQYLLELQRD
HHHHHCCCHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
WARTETYESTTGIAKQFGGSYGLGIIYAKTMFGAHEG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]