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The map label for this gene is ybfI [H]

Identifier: 158424720

GI number: 158424720

Start: 3542590

End: 3543480

Strand: Reverse

Name: ybfI [H]

Synonym: AZC_3096

Alternate gene names: 158424720

Gene position: 3543480-3542590 (Counterclockwise)

Preceding gene: 158424721

Following gene: 158424712

Centisome position: 65.99

GC content: 67.56

Gene sequence:

>891_bases
ATGGGAAGCACGATGCCACAACCTATGCCGGAAGCTTCAGGCTGGTCCGCGCGGGGGCAGGCTGAAGACAGCCGCGAGAC
ATCTCAGCTCGGCCTCACCGGAGGCATCGTCGCGCAGTTCGACCGGCGGCGCGATGCCGAGGGTTGGCAGGAGCAACTCG
ACACTTCGCGCAACCTTCTCACGGTGGCGCTGGACGAGGTGGGTGGCGCCACCGAGGTCTCCCTCTCGCCCTGCCGCCCC
ACGGCCCAGCGCGTGCGCCCCAACCATATGAGCTTCCTGCCGGCTGGCACCTGTGCGTGGGAAAGCTGCTCGCGCATCAG
CCTCTACCGGCGCGCCGTGCTGGCCTTCGACACCGAAACGGTGTCGCAGATCATCGGCCAGCCACTGTCCGAGCCGACGG
AAGCCAATGTGATGTTCCGCGATCCGCGCATCTGGCACTGCGCGGATCTTCTCGCGCGGATGAGCGATGGCACCGACCCC
GGCAGCCAGCTCTATTGCGACAGCCTTGCCACGGCGCTGTTCGTCGCCCTGTTCAGCCCGCGCGAGCCGTCCACCTCCGG
TGGGCTGCTGCCCTGGCAGTTGCGGCGGGTCACCGACTTCATCATGGATCATCTGGCGGAGGATATTCCGCTCGCCGATC
TGTCGGCGCTGCTGGGGCAGTCGCAGTCGCACTTCGGTCGCGAATTCCGGATCGCCACCGGCATGCCGCCGCACAAGTGG
CAGATGAATGCCCGTGTGCGGCGGGCGCAGGAACTGATGCTGGACCGGCACGGCAGCCTCGCCGACATCGCCATGGAAGT
GGGCTTCGCGGACCAGAGCCATTTCACGCGGGTCTTCCGCGCCCACACCGGCCTGCCGCCGGGCCAGTGGAAGCGCGCGC
ACGTCAATTAG

Upstream 100 bases:

>100_bases
GGCGACCGCACCATGGTGCGGAAGAGGGCCCTCATTTCACATCGTTTCACGCCCGTTCGGCGCCGGTCCCGCCTAGTCTC
TCCCCGATCGAGAGATTGAT

Downstream 100 bases:

>100_bases
GACGGTTGCCCCCTCAAGCAGGGCTCTGGGGGCGTTCCGACAGGGCCAGTGCCATGGCCCGCGCGACCGCGGCGAGAATG
TCCTCGCCGGCGGCGGGCTT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MGSTMPQPMPEASGWSARGQAEDSRETSQLGLTGGIVAQFDRRRDAEGWQEQLDTSRNLLTVALDEVGGATEVSLSPCRP
TAQRVRPNHMSFLPAGTCAWESCSRISLYRRAVLAFDTETVSQIIGQPLSEPTEANVMFRDPRIWHCADLLARMSDGTDP
GSQLYCDSLATALFVALFSPREPSTSGGLLPWQLRRVTDFIMDHLAEDIPLADLSALLGQSQSHFGREFRIATGMPPHKW
QMNARVRRAQELMLDRHGSLADIAMEVGFADQSHFTRVFRAHTGLPPGQWKRAHVN

Sequences:

>Translated_296_residues
MGSTMPQPMPEASGWSARGQAEDSRETSQLGLTGGIVAQFDRRRDAEGWQEQLDTSRNLLTVALDEVGGATEVSLSPCRP
TAQRVRPNHMSFLPAGTCAWESCSRISLYRRAVLAFDTETVSQIIGQPLSEPTEANVMFRDPRIWHCADLLARMSDGTDP
GSQLYCDSLATALFVALFSPREPSTSGGLLPWQLRRVTDFIMDHLAEDIPLADLSALLGQSQSHFGREFRIATGMPPHKW
QMNARVRRAQELMLDRHGSLADIAMEVGFADQSHFTRVFRAHTGLPPGQWKRAHVN
>Mature_295_residues
GSTMPQPMPEASGWSARGQAEDSRETSQLGLTGGIVAQFDRRRDAEGWQEQLDTSRNLLTVALDEVGGATEVSLSPCRPT
AQRVRPNHMSFLPAGTCAWESCSRISLYRRAVLAFDTETVSQIIGQPLSEPTEANVMFRDPRIWHCADLLARMSDGTDPG
SQLYCDSLATALFVALFSPREPSTSGGLLPWQLRRVTDFIMDHLAEDIPLADLSALLGQSQSHFGREFRIATGMPPHKWQ
MNARVRRAQELMLDRHGSLADIAMEVGFADQSHFTRVFRAHTGLPPGQWKRAHVN

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32813; Mature: 32682

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSTMPQPMPEASGWSARGQAEDSRETSQLGLTGGIVAQFDRRRDAEGWQEQLDTSRNLL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCCEE
TVALDEVGGATEVSLSPCRPTAQRVRPNHMSFLPAGTCAWESCSRISLYRRAVLAFDTET
EEEHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
VSQIIGQPLSEPTEANVMFRDPRIWHCADLLARMSDGTDPGSQLYCDSLATALFVALFSP
HHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
REPSTSGGLLPWQLRRVTDFIMDHLAEDIPLADLSALLGQSQSHFGREFRIATGMPPHKW
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCCEEEEECCCCCCHH
QMNARVRRAQELMLDRHGSLADIAMEVGFADQSHFTRVFRAHTGLPPGQWKRAHVN
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GSTMPQPMPEASGWSARGQAEDSRETSQLGLTGGIVAQFDRRRDAEGWQEQLDTSRNLL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCCEE
TVALDEVGGATEVSLSPCRPTAQRVRPNHMSFLPAGTCAWESCSRISLYRRAVLAFDTET
EEEHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
VSQIIGQPLSEPTEANVMFRDPRIWHCADLLARMSDGTDPGSQLYCDSLATALFVALFSP
HHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
REPSTSGGLLPWQLRRVTDFIMDHLAEDIPLADLSALLGQSQSHFGREFRIATGMPPHKW
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCCEEEEECCCCCCHH
QMNARVRRAQELMLDRHGSLADIAMEVGFADQSHFTRVFRAHTGLPPGQWKRAHVN
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]