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The map label for this gene is sodB [H]

Identifier: 158424677

GI number: 158424677

Start: 3489963

End: 3490559

Strand: Direct

Name: sodB [H]

Synonym: AZC_3053

Alternate gene names: 158424677

Gene position: 3489963-3490559 (Clockwise)

Preceding gene: 158424675

Following gene: 158424678

Centisome position: 64.99

GC content: 58.63

Gene sequence:

>597_bases
ATGTCCTTCACGCTTCCCGACCTGCCTTATTCTTACGACGCCCTCGCGCCCTATATGTCGCGCGAAACCCTCGAATACCA
TCATGACAAGCACCATCTCGCTTACGTCAATAATGGCAACAATTTACTAAAGGGAACGGAATTCGAGGGAAAATCCCTCG
AGGAGATCGTGAAGGGCTCGTTCGGCAAGAACGCCCCCCTCTTCAACAATGCCGGCCAGCACTACAACCACCTGCATTTC
TGGCACTGGATGAAGCCGAACGGCGGCGGCGCCATTCCGGGCGAGCTTGAGAAGAAGATCGTCGAGGATTTCGGTTCGGT
CGAGAAGTTCAAGGAAGACTTCATCGCCGCCGGCGTCGGCCAGTTCGGCTCGGGCTGGGCCTGGCTCGCGGTCAAGGACG
GCAAGCTCTCCATCGCCAAGACCCCGAACGGCGAGAGCCCGCTGGTCTCCGGCGCCACGCCGATCCTCGGCGTCGACGTG
TGGGAGCACTCCTATTACATCGATTATCGCAACCGCCGTCCGGACTACCTGAAGGCGTTCGTGGATCATCTCGTGAATTG
GGAGTACGTGGCGGAGCTTTACGGCAAGGCCATCTGA

Upstream 100 bases:

>100_bases
TCGCGCCCTATCTAGGGCGAAGTTGGGGCGGGTCGGTGCGGCGGACCTCAGGACGCCAGCGGCCCATCGACCCCAGCCGG
ATCGAACGCGGAGACCCCAG

Downstream 100 bases:

>100_bases
ACTCCATAGTTTGCGATATATTTCGGGCCGGCATGCAAAACCGCGTGCCGGCCCTTTCTTTTGGGGCCTGCACATTCGCG
TTACCATGCAACGCTGAAGA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSFTLPDLPYSYDALAPYMSRETLEYHHDKHHLAYVNNGNNLLKGTEFEGKSLEEIVKGSFGKNAPLFNNAGQHYNHLHF
WHWMKPNGGGAIPGELEKKIVEDFGSVEKFKEDFIAAGVGQFGSGWAWLAVKDGKLSIAKTPNGESPLVSGATPILGVDV
WEHSYYIDYRNRRPDYLKAFVDHLVNWEYVAELYGKAI

Sequences:

>Translated_198_residues
MSFTLPDLPYSYDALAPYMSRETLEYHHDKHHLAYVNNGNNLLKGTEFEGKSLEEIVKGSFGKNAPLFNNAGQHYNHLHF
WHWMKPNGGGAIPGELEKKIVEDFGSVEKFKEDFIAAGVGQFGSGWAWLAVKDGKLSIAKTPNGESPLVSGATPILGVDV
WEHSYYIDYRNRRPDYLKAFVDHLVNWEYVAELYGKAI
>Mature_197_residues
SFTLPDLPYSYDALAPYMSRETLEYHHDKHHLAYVNNGNNLLKGTEFEGKSLEEIVKGSFGKNAPLFNNAGQHYNHLHFW
HWMKPNGGGAIPGELEKKIVEDFGSVEKFKEDFIAAGVGQFGSGWAWLAVKDGKLSIAKTPNGESPLVSGATPILGVDVW
EHSYYIDYRNRRPDYLKAFVDHLVNWEYVAELYGKAI

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=47.7386934673367, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=47.7386934673367, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=41.5384615384615, Blast_Score=132, Evalue=2e-31,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=55.9585492227979, Blast_Score=215, Evalue=1e-57,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=46.6019417475728, Blast_Score=181, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=39.3034825870647, Blast_Score=135, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=39, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=35.4368932038835, Blast_Score=102, Evalue=3e-23,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=41.2060301507538, Blast_Score=139, Evalue=1e-33,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22364; Mature: 22233

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTLPDLPYSYDALAPYMSRETLEYHHDKHHLAYVNNGNNLLKGTEFEGKSLEEIVKGS
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCC
FGKNAPLFNNAGQHYNHLHFWHWMKPNGGGAIPGELEKKIVEDFGSVEKFKEDFIAAGVG
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QFGSGWAWLAVKDGKLSIAKTPNGESPLVSGATPILGVDVWEHSYYIDYRNRRPDYLKAF
CCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCHHHHHHH
VDHLVNWEYVAELYGKAI
HHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SFTLPDLPYSYDALAPYMSRETLEYHHDKHHLAYVNNGNNLLKGTEFEGKSLEEIVKGS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCC
FGKNAPLFNNAGQHYNHLHFWHWMKPNGGGAIPGELEKKIVEDFGSVEKFKEDFIAAGVG
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QFGSGWAWLAVKDGKLSIAKTPNGESPLVSGATPILGVDVWEHSYYIDYRNRRPDYLKAF
CCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCHHHHHHH
VDHLVNWEYVAELYGKAI
HHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]