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The map label for this gene is rpiR [C]

Identifier: 158424621

GI number: 158424621

Start: 3427189

End: 3428172

Strand: Reverse

Name: rpiR [C]

Synonym: AZC_2997

Alternate gene names: 158424621

Gene position: 3428172-3427189 (Counterclockwise)

Preceding gene: 158424628

Following gene: 158424620

Centisome position: 63.84

GC content: 67.99

Gene sequence:

>984_bases
GTGAAAATTATCGTTGCACGTCCGTCATATTCTGACACATATTTTTTCAACTTCTTCGCTCACGCCTCAGGATTGCGCGT
TTCCGTGACACCGCTTTCGCTCGTGGATCTCGTCCGCGCCCATCGTGCCGGCATGACGCCGCTGCACGGCCGCGTGGCCG
ACTTCGTGCTGCGCCACCCTCTGCAGGCGGCGACCATGGGCATTGAGGATCTGGCGGCCGCGGCGGAAGTGTCGGTCGCC
ACCATCAACCGTTTCGTGCGTGGGCTCGGCCTTGAGGGCTTCTCGCAGTTCCGGGCTTTGGCGGTGGCGAGCTTCCGGCC
CTTGAGCCCGGTCGAGAAGCTGGAGGCGCAGGCAGCGGCCTCCGGCCGCGACACCGACCATGTGCAGGCTTCCCTCGACT
CCGGCCTTGCCAATCTGCGCGCCGCCCGTGCGGTTGCCGATGCGGATGTCTTCCGGCAGGCGGCGGAGGCGGTGTCTTCG
GCGGACCGGGTGGTGTTGCTGGGCTTCGGCCTCAGCGCACCTCTGGTCGGGCTCCTGGCGGACATGCTGATTCCCTTCTG
CCGGGCCCAGATGATCCTTGACGGGCAGGGCGGGCAGGAGCGCATGATCCGCCGGGCTTTCAACGTGAGGGCCGGTGACG
TGGTGATCGCCCTGGCCCTGCCGCGCTACTCCCTCTCCACCATCGAACTCGCCCGCGGCATGCGCTCGCAGGGCGCTCGG
ATAATCGGCATCACCGACAGCCTGTCGTCTCCGCTGGCGCTGGAAGCCGACCTCCTTCTGCTCGGCCCCGCCGAGCATCC
CCTCCTTCACGCATCCGCCACCGCGCTCGTTGCGCTCTTCGAGGCGCTCGTGGCGCTGCTCACGGCCCGGCGCCAGAGCG
CGGGCGATGCGGCCGAACTCACGCGGCGCATCGCGCCCTTCCTCCATGATGCGGTGGCCGAAGCGCCCGACCGCCCGATC
CTTGCCGGAAGGCTCCTGCCATGA

Upstream 100 bases:

>100_bases
ATATGTCTGATTGCGTTCGCAAATCCCTTGTCGGGGAGCGCAGCGGCATCTGGTCAGATTGCAGGCGATGCTGCGACTTG
CCCACATGCTGGGCATGTGA

Downstream 100 bases:

>100_bases
CCGTGACCCCGCTTTCCGCTGCGCCCACGTCCGCCGCCGCGTCCGCGCTGGTGCGGGTGGAAGGGCTGTGCGTGGATTTC
CCCGGCGAGGACAGCACCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MKIIVARPSYSDTYFFNFFAHASGLRVSVTPLSLVDLVRAHRAGMTPLHGRVADFVLRHPLQAATMGIEDLAAAAEVSVA
TINRFVRGLGLEGFSQFRALAVASFRPLSPVEKLEAQAAASGRDTDHVQASLDSGLANLRAARAVADADVFRQAAEAVSS
ADRVVLLGFGLSAPLVGLLADMLIPFCRAQMILDGQGGQERMIRRAFNVRAGDVVIALALPRYSLSTIELARGMRSQGAR
IIGITDSLSSPLALEADLLLLGPAEHPLLHASATALVALFEALVALLTARRQSAGDAAELTRRIAPFLHDAVAEAPDRPI
LAGRLLP

Sequences:

>Translated_327_residues
MKIIVARPSYSDTYFFNFFAHASGLRVSVTPLSLVDLVRAHRAGMTPLHGRVADFVLRHPLQAATMGIEDLAAAAEVSVA
TINRFVRGLGLEGFSQFRALAVASFRPLSPVEKLEAQAAASGRDTDHVQASLDSGLANLRAARAVADADVFRQAAEAVSS
ADRVVLLGFGLSAPLVGLLADMLIPFCRAQMILDGQGGQERMIRRAFNVRAGDVVIALALPRYSLSTIELARGMRSQGAR
IIGITDSLSSPLALEADLLLLGPAEHPLLHASATALVALFEALVALLTARRQSAGDAAELTRRIAPFLHDAVAEAPDRPI
LAGRLLP
>Mature_327_residues
MKIIVARPSYSDTYFFNFFAHASGLRVSVTPLSLVDLVRAHRAGMTPLHGRVADFVLRHPLQAATMGIEDLAAAAEVSVA
TINRFVRGLGLEGFSQFRALAVASFRPLSPVEKLEAQAAASGRDTDHVQASLDSGLANLRAARAVADADVFRQAAEAVSS
ADRVVLLGFGLSAPLVGLLADMLIPFCRAQMILDGQGGQERMIRRAFNVRAGDVVIALALPRYSLSTIELARGMRSQGAR
IIGITDSLSSPLALEADLLLLGPAEHPLLHASATALVALFEALVALLTARRQSAGDAAELTRRIAPFLHDAVAEAPDRPI
LAGRLLP

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=250, Percent_Identity=28, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 34692; Mature: 34692

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS00356 HTH_LACI_1 ; PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIVARPSYSDTYFFNFFAHASGLRVSVTPLSLVDLVRAHRAGMTPLHGRVADFVLRHP
CEEEEECCCCCCCCEEEHHHHCCCCEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
LQAATMGIEDLAAAAEVSVATINRFVRGLGLEGFSQFRALAVASFRPLSPVEKLEAQAAA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHC
SGRDTDHVQASLDSGLANLRAARAVADADVFRQAAEAVSSADRVVLLGFGLSAPLVGLLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
DMLIPFCRAQMILDGQGGQERMIRRAFNVRAGDVVIALALPRYSLSTIELARGMRSQGAR
HHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCE
IIGITDSLSSPLALEADLLLLGPAEHPLLHASATALVALFEALVALLTARRQSAGDAAEL
EEEECCCCCCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
TRRIAPFLHDAVAEAPDRPILAGRLLP
HHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKIIVARPSYSDTYFFNFFAHASGLRVSVTPLSLVDLVRAHRAGMTPLHGRVADFVLRHP
CEEEEECCCCCCCCEEEHHHHCCCCEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
LQAATMGIEDLAAAAEVSVATINRFVRGLGLEGFSQFRALAVASFRPLSPVEKLEAQAAA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHC
SGRDTDHVQASLDSGLANLRAARAVADADVFRQAAEAVSSADRVVLLGFGLSAPLVGLLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
DMLIPFCRAQMILDGQGGQERMIRRAFNVRAGDVVIALALPRYSLSTIELARGMRSQGAR
HHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCE
IIGITDSLSSPLALEADLLLLGPAEHPLLHASATALVALFEALVALLTARRQSAGDAAEL
EEEECCCCCCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
TRRIAPFLHDAVAEAPDRPILAGRLLP
HHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]