| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is lolD [H]
Identifier: 158424611
GI number: 158424611
Start: 3415762
End: 3416427
Strand: Direct
Name: lolD [H]
Synonym: AZC_2987
Alternate gene names: 158424611
Gene position: 3415762-3416427 (Clockwise)
Preceding gene: 158424610
Following gene: 158424612
Centisome position: 63.61
GC content: 72.22
Gene sequence:
>666_bases GTGGCCGCCCTCAGCATCCGCGACCTTGAGGTGCGCTTTCCAGGCCTCGCCCAGCCGGCGCTGGCCATTCCCGCGCTGGA CCTCGACCGGGGGGCGCGCGTCGCGGTGAGCGGGCCGTCCGGCTGCGGCAAGACCACCCTACTCAACGTCCTCTCCGGCC TCGAAAAGATCGGCCACGGCCATGTGGCATGGGCGGACACGGACCTGTCCCGCCTCGGCGAAGGCGCGCGCGACCGCTGG CGTGCCGCCCATGTGGGGCTGGTGATGCAGGATTTCCATCTCTTCCCCGGCCTCTCGGCGCTGGAGAATGTGCTACTGCC CCAGCGCCTCGGCTGCTGGCGCCTCCAGCCATCCAAACGGGTGGAAGCGCTGCGCCTCCTGGAGCGCGTGGGCCTGCCCA ATCCGCGCCAGCCGGTGGAAACGCTCTCGCGCGGCCAGATGCAGCGCGTGGCCGTTGCCCGCGCCCTCATCGCGCGCCCC GAAATCCTGATCGCCGACGAGCCCACCGCCAGCCTCGATGCGGAGGCGGGAGCGGCGGTGGCCGATCTGCTGCTGGATCT GGCGCAGGAAGCGCAGGCGACGCTCATCGTCGCAACCCATGATCCGCGTCTCGCCGGCCGCCTCTCCCGCACGCTCCGGC TGGATGCCGGGCGGCTCGCCGCCTGA
Upstream 100 bases:
>100_bases GGTGCGCGGCACGCTGGAAGTGGGCTCCTGGACCGATCCCAACACCGGCTTCGTCAGCCTGCTGCGCCTGCGCCGCGCCA GCTTCCGCAAGGCGTGAGAC
Downstream 100 bases:
>100_bases GGCACCCATGTTTCGCTTCATCGCAGCGGATCTCCGGCGGCAATGGATCGGCGTTCTCGCTGTCACACTCATCATTGCGC TGGCGGTGGCGCTGGGCGTG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MAALSIRDLEVRFPGLAQPALAIPALDLDRGARVAVSGPSGCGKTTLLNVLSGLEKIGHGHVAWADTDLSRLGEGARDRW RAAHVGLVMQDFHLFPGLSALENVLLPQRLGCWRLQPSKRVEALRLLERVGLPNPRQPVETLSRGQMQRVAVARALIARP EILIADEPTASLDAEAGAAVADLLLDLAQEAQATLIVATHDPRLAGRLSRTLRLDAGRLAA
Sequences:
>Translated_221_residues MAALSIRDLEVRFPGLAQPALAIPALDLDRGARVAVSGPSGCGKTTLLNVLSGLEKIGHGHVAWADTDLSRLGEGARDRW RAAHVGLVMQDFHLFPGLSALENVLLPQRLGCWRLQPSKRVEALRLLERVGLPNPRQPVETLSRGQMQRVAVARALIARP EILIADEPTASLDAEAGAAVADLLLDLAQEAQATLIVATHDPRLAGRLSRTLRLDAGRLAA >Mature_220_residues AALSIRDLEVRFPGLAQPALAIPALDLDRGARVAVSGPSGCGKTTLLNVLSGLEKIGHGHVAWADTDLSRLGEGARDRWR AAHVGLVMQDFHLFPGLSALENVLLPQRLGCWRLQPSKRVEALRLLERVGLPNPRQPVETLSRGQMQRVAVARALIARPE ILIADEPTASLDAEAGAAVADLLLDLAQEAQATLIVATHDPRLAGRLSRTLRLDAGRLAA
Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI150417984, Length=205, Percent_Identity=36.5853658536585, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI42741659, Length=189, Percent_Identity=31.2169312169312, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI46592898, Length=179, Percent_Identity=31.2849162011173, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592964, Length=179, Percent_Identity=31.2849162011173, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592915, Length=179, Percent_Identity=31.2849162011173, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592956, Length=179, Percent_Identity=31.2849162011173, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI215820660, Length=170, Percent_Identity=30, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI20143975, Length=170, Percent_Identity=30, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4505771, Length=211, Percent_Identity=28.436018957346, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI9961252, Length=211, Percent_Identity=28.436018957346, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI9961250, Length=215, Percent_Identity=29.3023255813954, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592971, Length=179, Percent_Identity=31.2849162011173, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592978, Length=179, Percent_Identity=31.2849162011173, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=188, Percent_Identity=31.9148936170213, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI148612844, Length=188, Percent_Identity=31.9148936170213, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI27477115, Length=186, Percent_Identity=29.5698924731183, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1786703, Length=199, Percent_Identity=46.2311557788945, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=38.5, Blast_Score=124, Evalue=4e-30, Organism=Escherichia coli, GI1790544, Length=204, Percent_Identity=41.1764705882353, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=35.8078602620087, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1786872, Length=191, Percent_Identity=39.7905759162304, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=34.0909090909091, Blast_Score=113, Evalue=9e-27, Organism=Escherichia coli, GI1787029, Length=203, Percent_Identity=38.423645320197, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1788761, Length=182, Percent_Identity=40.1098901098901, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI87081709, Length=189, Percent_Identity=36.5079365079365, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787089, Length=210, Percent_Identity=36.6666666666667, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1789672, Length=201, Percent_Identity=35.3233830845771, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=37, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1787370, Length=206, Percent_Identity=34.4660194174757, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=34.5177664974619, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI1787500, Length=219, Percent_Identity=37.4429223744292, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI87082267, Length=203, Percent_Identity=33.9901477832512, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1789962, Length=207, Percent_Identity=32.3671497584541, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789963, Length=213, Percent_Identity=29.5774647887324, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=34.1708542713568, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787712, Length=199, Percent_Identity=34.6733668341709, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87081791, Length=215, Percent_Identity=31.6279069767442, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=37.8640776699029, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1789891, Length=208, Percent_Identity=33.6538461538462, Blast_Score=86, Evalue=1e-18, Organism=Escherichia coli, GI1786398, Length=194, Percent_Identity=32.4742268041237, Blast_Score=85, Evalue=3e-18, Organism=Escherichia coli, GI1787112, Length=228, Percent_Identity=29.3859649122807, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI48994883, Length=230, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789032, Length=185, Percent_Identity=30.2702702702703, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789864, Length=226, Percent_Identity=30.0884955752212, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=31.4553990610329, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=31.1557788944724, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788644, Length=191, Percent_Identity=31.413612565445, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI1790162, Length=221, Percent_Identity=30.316742081448, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI1788897, Length=168, Percent_Identity=36.9047619047619, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=31, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=29.2452830188679, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1788210, Length=198, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788165, Length=207, Percent_Identity=30.4347826086957, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1790534, Length=198, Percent_Identity=35.3535353535354, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787548, Length=219, Percent_Identity=28.7671232876712, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI87081782, Length=200, Percent_Identity=30, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1788450, Length=202, Percent_Identity=31.6831683168317, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787759, Length=233, Percent_Identity=28.3261802575107, Blast_Score=70, Evalue=8e-14, Organism=Escherichia coli, GI48994997, Length=185, Percent_Identity=32.972972972973, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1786698, Length=171, Percent_Identity=29.2397660818713, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789991, Length=179, Percent_Identity=30.1675977653631, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786803, Length=205, Percent_Identity=30.7317073170732, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1790190, Length=204, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI145693107, Length=218, Percent_Identity=31.651376146789, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1790525, Length=206, Percent_Identity=24.7572815533981, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787547, Length=183, Percent_Identity=31.1475409836066, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=25, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788053, Length=177, Percent_Identity=33.8983050847458, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1788506, Length=214, Percent_Identity=32.2429906542056, Blast_Score=64, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193202349, Length=207, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534520, Length=205, Percent_Identity=31.219512195122, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17558664, Length=200, Percent_Identity=32, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71984940, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI25146777, Length=214, Percent_Identity=32.2429906542056, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71996809, Length=179, Percent_Identity=30.7262569832402, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=182, Percent_Identity=31.3186813186813, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211015, Length=182, Percent_Identity=31.3186813186813, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17552232, Length=234, Percent_Identity=29.9145299145299, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17565938, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17567269, Length=181, Percent_Identity=32.5966850828729, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193208177, Length=211, Percent_Identity=29.3838862559242, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=204, Percent_Identity=28.4313725490196, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17533971, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=181, Percent_Identity=31.4917127071823, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569143, Length=230, Percent_Identity=29.5652173913043, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115535101, Length=178, Percent_Identity=33.1460674157303, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17543740, Length=180, Percent_Identity=29.4444444444444, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17552010, Length=187, Percent_Identity=30.4812834224599, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=228, Percent_Identity=31.140350877193, Blast_Score=76, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6319856, Length=222, Percent_Identity=27.4774774774775, Blast_Score=75, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6320874, Length=205, Percent_Identity=29.7560975609756, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582014, Length=203, Percent_Identity=29.5566502463054, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24582012, Length=203, Percent_Identity=29.5566502463054, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24581191, Length=199, Percent_Identity=32.1608040201005, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24581189, Length=199, Percent_Identity=32.1608040201005, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24581193, Length=199, Percent_Identity=32.1608040201005, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24581195, Length=199, Percent_Identity=32.1608040201005, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI85725262, Length=202, Percent_Identity=27.7227722772277, Blast_Score=77, Evalue=6e-15, Organism=Drosophila melanogaster, GI28574744, Length=176, Percent_Identity=34.0909090909091, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281362751, Length=176, Percent_Identity=29.5454545454545, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24650855, Length=176, Percent_Identity=29.5454545454545, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI19920532, Length=176, Percent_Identity=32.3863636363636, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580930, Length=176, Percent_Identity=32.3863636363636, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24650853, Length=176, Percent_Identity=29.5454545454545, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574533, Length=177, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552199, Length=200, Percent_Identity=32, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24581407, Length=200, Percent_Identity=32, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI161076682, Length=178, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI161076684, Length=178, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581617, Length=178, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581615, Length=178, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581409, Length=196, Percent_Identity=31.6326530612245, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015854 - InterPro: IPR003593 - InterPro: IPR011924 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23658; Mature: 23527
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALSIRDLEVRFPGLAQPALAIPALDLDRGARVAVSGPSGCGKTTLLNVLSGLEKIGHG CCCCCEEEEEEECCCCCCCHHHCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC HVAWADTDLSRLGEGARDRWRAAHVGLVMQDFHLFPGLSALENVLLPQRLGCWRLQPSKR CEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCHHHH VEALRLLERVGLPNPRQPVETLSRGQMQRVAVARALIARPEILIADEPTASLDAEAGAAV HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH ADLLLDLAQEAQATLIVATHDPRLAGRLSRTLRLDAGRLAA HHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AALSIRDLEVRFPGLAQPALAIPALDLDRGARVAVSGPSGCGKTTLLNVLSGLEKIGHG CCCCEEEEEEECCCCCCCHHHCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC HVAWADTDLSRLGEGARDRWRAAHVGLVMQDFHLFPGLSALENVLLPQRLGCWRLQPSKR CEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCHHHH VEALRLLERVGLPNPRQPVETLSRGQMQRVAVARALIARPEILIADEPTASLDAEAGAAV HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH ADLLLDLAQEAQATLIVATHDPRLAGRLSRTLRLDAGRLAA HHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]