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The map label for this gene is yqgF [C]

Identifier: 158424464

GI number: 158424464

Start: 3233959

End: 3234516

Strand: Reverse

Name: yqgF [C]

Synonym: AZC_2840

Alternate gene names: 158424464

Gene position: 3234516-3233959 (Counterclockwise)

Preceding gene: 158424470

Following gene: 158424462

Centisome position: 60.24

GC content: 69.53

Gene sequence:

>558_bases
GTGGTTCACACCGCCGTGCGGACGAGTGGCCAGAGCCTGCAAAGGCTGCTTAAAGGGCGCATGACAGACGAGACGCCGAA
GCCCGCCGCCACCGTTGGCCCCCTTGCCGAGATCGCGGCGGCGCTGCCCGAACGCGGTTCGCTGCTCGGGCTCGACCTCG
GCACCAAGACCATCGGGGTGGCCACCTGCGATCCCGACCGGCGTCTCGCCACCGTCGTGGAAACGGTGAAGCGCACCAAG
TTCACGCAGGATGCCGAGCGGCTGATGGTGCTGGCGAGCGAGCGCAAGGCGGTGGCCTTCGTGCTCGGCCTGCCCCTGAA
CATGGACGGCAGCGAGGGGCCGCGCGTGCAGGCGAGCCGTGCCTTTGCCCGCAACTTCGCCCGCCTCTCCGGCCTGCCCA
TCGCCTTCTGGGATGAGCGCCTGTCCACGGTGGCGGTGGAGCGGGCGCTGATTTCGGCGGACGTGAGCCGGGCCAAGCGG
GCGAATGTCATCGACCAGCACGCCGCCGCCTTCATCCTGCAAGGGGCCATCGACTTCCTGAACGGCCGGCGGTTCTGA

Upstream 100 bases:

>100_bases
TTCATGGGAAAGCCCTTTCGGATGAAGACGCAAGGGAGGGATCGAATGGCGGCGGAGTATCGGTGAAGGGCCCCGCGCCC
GCAACGCACCCGCCGCTCCT

Downstream 100 bases:

>100_bases
AAGGGGGCGGCGCGTTTTGCCGCCGCCCGTGCGCCAGCGCGGTCAGGCGAGCCGCGTCGGCCCGAAGATCTCCTCGAAGG
CGACGCGCAGAACGCTGTCC

Product: holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MVHTAVRTSGQSLQRLLKGRMTDETPKPAATVGPLAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTK
FTQDAERLMVLASERKAVAFVLGLPLNMDGSEGPRVQASRAFARNFARLSGLPIAFWDERLSTVAVERALISADVSRAKR
ANVIDQHAAAFILQGAIDFLNGRRF

Sequences:

>Translated_185_residues
MVHTAVRTSGQSLQRLLKGRMTDETPKPAATVGPLAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTK
FTQDAERLMVLASERKAVAFVLGLPLNMDGSEGPRVQASRAFARNFARLSGLPIAFWDERLSTVAVERALISADVSRAKR
ANVIDQHAAAFILQGAIDFLNGRRF
>Mature_185_residues
MVHTAVRTSGQSLQRLLKGRMTDETPKPAATVGPLAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTK
FTQDAERLMVLASERKAVAFVLGLPLNMDGSEGPRVQASRAFARNFARLSGLPIAFWDERLSTVAVERALISADVSRAKR
ANVIDQHAAAFILQGAIDFLNGRRF

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=33.8345864661654, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 19965; Mature: 19965

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHTAVRTSGQSLQRLLKGRMTDETPKPAATVGPLAEIAAALPERGSLLGLDLGTKTIGV
CCCCHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEE
ATCDPDRRLATVVETVKRTKFTQDAERLMVLASERKAVAFVLGLPLNMDGSEGPRVQASR
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHH
AFARNFARLSGLPIAFWDERLSTVAVERALISADVSRAKRANVIDQHAAAFILQGAIDFL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGRRF
CCCCC
>Mature Secondary Structure
MVHTAVRTSGQSLQRLLKGRMTDETPKPAATVGPLAEIAAALPERGSLLGLDLGTKTIGV
CCCCHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEE
ATCDPDRRLATVVETVKRTKFTQDAERLMVLASERKAVAFVLGLPLNMDGSEGPRVQASR
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHH
AFARNFARLSGLPIAFWDERLSTVAVERALISADVSRAKRANVIDQHAAAFILQGAIDFL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGRRF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA