| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is erpA [H]
Identifier: 158424432
GI number: 158424432
Start: 3193867
End: 3194289
Strand: Direct
Name: erpA [H]
Synonym: AZC_2808
Alternate gene names: 158424432
Gene position: 3193867-3194289 (Clockwise)
Preceding gene: 158424428
Following gene: 158424433
Centisome position: 59.48
GC content: 65.96
Gene sequence:
>423_bases TTGGCCGCGCACGTTGACTCGGCGGCGGGCGCACTTAACTATCCCTGCAACATGCAATCAACCGCCGAAAGGCGTGGGAC GACATCCATGGATACCCCCACCACCGTGATCGTCACGGACAGCGCCGCCCGGCGCATCAGCGAAATCCTGTCCGCAGAGG CGCCCGAGAGCGCGCTTCGGGTGAGCGTGGAAGGCGGCGGCTGCTCCGGCTTCCAGTATCGCTTCGACGTCACCCGCGAG CGCAACCCGGACGACATCGTCATCGAGCAGGACGGCGCGACCGTCCTCGTGGACAAGGTCTCGCTCGACTACATGTCCGG CTGCCGCATCGACTTCGTGGACGACCTGATCGGCGCCGCCTTCAAGATCGAGAACCCCCACGCCACCGCCTCCTGCGGCT GCGGGACGAGCTTCTCCATCTGA
Upstream 100 bases:
>100_bases ACGAGGCGGCCGCGCGTCCACACGGGATCGCAGGCCCAGGTCATGCGGGGCCGCGCACCGGAAACCGCCATGCCACCTCC ATACGCCGATACCGGCGACA
Downstream 100 bases:
>100_bases AGACGGCCCCATGCAGGGCGCGCTTGCATCGCTGCACGAGCCGTCGGCTAGGCCTTGCGCCGCGCCCCGATCACGACGCC GGTCAGGATGAGCAGGGCCG
Product: HesB protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MAAHVDSAAGALNYPCNMQSTAERRGTTSMDTPTTVIVTDSAARRISEILSAEAPESALRVSVEGGGCSGFQYRFDVTRE RNPDDIVIEQDGATVLVDKVSLDYMSGCRIDFVDDLIGAAFKIENPHATASCGCGTSFSI
Sequences:
>Translated_140_residues MAAHVDSAAGALNYPCNMQSTAERRGTTSMDTPTTVIVTDSAARRISEILSAEAPESALRVSVEGGGCSGFQYRFDVTRE RNPDDIVIEQDGATVLVDKVSLDYMSGCRIDFVDDLIGAAFKIENPHATASCGCGTSFSI >Mature_139_residues AAHVDSAAGALNYPCNMQSTAERRGTTSMDTPTTVIVTDSAARRISEILSAEAPESALRVSVEGGGCSGFQYRFDVTRER NPDDIVIEQDGATVLVDKVSLDYMSGCRIDFVDDLIGAAFKIENPHATASCGCGTSFSI
Specific function: Required for insertion of 4Fe-4S clusters (Potential) [H]
COG id: COG0316
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hesB/iscA family [H]
Homologues:
Organism=Homo sapiens, GI160420328, Length=106, Percent_Identity=49.0566037735849, Blast_Score=100, Evalue=6e-22, Organism=Homo sapiens, GI52426768, Length=109, Percent_Identity=30.2752293577982, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786351, Length=103, Percent_Identity=43.6893203883495, Blast_Score=97, Evalue=3e-22, Organism=Escherichia coli, GI1788877, Length=106, Percent_Identity=37.7358490566038, Blast_Score=87, Evalue=4e-19, Organism=Escherichia coli, GI1787974, Length=105, Percent_Identity=34.2857142857143, Blast_Score=80, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71998452, Length=118, Percent_Identity=38.135593220339, Blast_Score=92, Evalue=9e-20, Organism=Caenorhabditis elegans, GI25146411, Length=110, Percent_Identity=30.9090909090909, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193209025, Length=105, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6323001, Length=105, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6325324, Length=125, Percent_Identity=32, Blast_Score=72, Evalue=3e-14, Organism=Drosophila melanogaster, GI24649697, Length=115, Percent_Identity=45.2173913043478, Blast_Score=98, Evalue=1e-21, Organism=Drosophila melanogaster, GI24642263, Length=116, Percent_Identity=31.0344827586207, Blast_Score=73, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000361 - InterPro: IPR016092 - InterPro: IPR017870 - InterPro: IPR023063 [H]
Pfam domain/function: PF01521 Fe-S_biosyn [H]
EC number: NA
Molecular weight: Translated: 14845; Mature: 14713
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAHVDSAAGALNYPCNMQSTAERRGTTSMDTPTTVIVTDSAARRISEILSAEAPESALR CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCEE VSVEGGGCSGFQYRFDVTRERNPDDIVIEQDGATVLVDKVSLDYMSGCRIDFVDDLIGAA EEECCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEEECCHHHCCCCEEHHHHHHCCE FKIENPHATASCGCGTSFSI EEECCCCCCEECCCCCCCCC >Mature Secondary Structure AAHVDSAAGALNYPCNMQSTAERRGTTSMDTPTTVIVTDSAARRISEILSAEAPESALR CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCEE VSVEGGGCSGFQYRFDVTRERNPDDIVIEQDGATVLVDKVSLDYMSGCRIDFVDDLIGAA EEECCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEEECCHHHCCCCEEHHHHHHCCE FKIENPHATASCGCGTSFSI EEECCCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA