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The map label for this gene is ygbK [C]

Identifier: 158424399

GI number: 158424399

Start: 3155745

End: 3157019

Strand: Reverse

Name: ygbK [C]

Synonym: AZC_2775

Alternate gene names: 158424399

Gene position: 3157019-3155745 (Counterclockwise)

Preceding gene: 158424400

Following gene: 158424397

Centisome position: 58.79

GC content: 70.9

Gene sequence:

>1275_bases
ATGACCCTTCTTCTTGGCTGTATCGCCGACGACTATACCGGTGCCTCGGATCTCGCCAACACCCTGACCAAAGCGGGCCT
GCGCACCGTGCAGACCATCGGCGTCCCGGCGGCGGACTTTGCCCTGCCCGATGTGGATGCGGTGGTGGTGGCGCTCAAGA
GCCGCTCCATTCCCGCCACCGAGGCGGTGGCGCTGTCCCGCGGCGCCCGCGATTTCCTCGGAGGCGAGGGGGCGCGGCAC
ATCCTGTTCAAGATCTGCTCGACCTTCGATTCCACGGACGCCGGCAATATCGGTCCGGTCACCGATGCCCTGCGTGCCGA
TGCGAGTGCCGGCCCCGTTCTGGTGACGCCCGCCTTTCCGGAGACCGGGCGGACGGTCTACTTCGGGCATCTGTTCGTCG
GCGCGGTGCCACTCAACGAAAGCCCGCTGAAGGACCACCCCCTGAACCCCATGACCGACGCCAACCTGGTGCGGGTGATG
GCGCGCCAGTCGGCAGCGCCGGTGGGGCTCGTCGATCTTCACACCGTGGCCCGCGGGCCCGAGGCGGTGCGCAGCCGCCT
CGCCGTGCTGGCGCAAGAGGGCAAGGGCGCGGCCATCATCGATGCGGTGTTCGAGCGCGATCTCGAGACGATTGGTGCCG
TTGCTCTGGACGAGCCGCTGTCCGTGGGGGCCTCTGGCCTTGGTCTTGGCCTTGCCCGCACCCTCGCAGCCGGGCGGACA
GCTCCGACTGACGGCGCCGTCCGCTGGGGCGCGTCGGTCCCCGGCGCCATCGCGGCGATCGCCGGCAGTTGTTCGGCCGC
GACGCTGGAACAGATCGCGCGGGCGGAAGAGAACATGCCTGTGCTGCGCCTCGCGGCCGAACAACTCGTCACCGACGGTG
CAGCCGTGGTTGCCGAAGCCATCGGCTGGGCGCGGGAGCGGCTGGCGCACGGGCCGGTGCTGATCGCCGCCAGCGGCACC
CCGCAGGAGGTGGCGGCCGTTCAGGCGCGCCATGGCCGCCATGCCTCGGGCCTCGCCATCGAGCAGGCGTCCGCCGCCCT
CGCAGCGGGCCTCGTCGAGGCCGGTGTGCGCCGGCTGGTGGTGGCGGGCGGGGAAACCTCAGGCGCCTGCGTCGACCGGC
TGGGCATTGCCGGTTTCGAGGTGGGGCCGGAGATCGCGGCCGGCGTTCCGCTCCTGCGGACGGTCGCCTACGCGCCGCAG
ATGCTGCTGGCCCTTAAGTCCGGCAATTTCGGCGGCCCGGATTTCTTCGCCAGGGCGTTTGCGGCCATGTCCTGA

Upstream 100 bases:

>100_bases
ATGACGGATATATCGGCTGCGATTATCGTCCCCGCGGGCGTTCCACCCTTGCGGGTCTCGGCTGGATGAAGCCTTATCTT
CCTCGCGTTCGGGCCATCGC

Downstream 100 bases:

>100_bases
GCGGACGGCCTCAGCCTGCCGCAGCGGAGACACGGCAGGCGCGCGCCACGGTGCCGATGAGCGCGCGGTCCTTCTCGTGA
TCGACGAGGAACATCATGCT

Product: type III effector Hrp-dependent outer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTLLLGCIADDYTGASDLANTLTKAGLRTVQTIGVPAADFALPDVDAVVVALKSRSIPATEAVALSRGARDFLGGEGARH
ILFKICSTFDSTDAGNIGPVTDALRADASAGPVLVTPAFPETGRTVYFGHLFVGAVPLNESPLKDHPLNPMTDANLVRVM
ARQSAAPVGLVDLHTVARGPEAVRSRLAVLAQEGKGAAIIDAVFERDLETIGAVALDEPLSVGASGLGLGLARTLAAGRT
APTDGAVRWGASVPGAIAAIAGSCSAATLEQIARAEENMPVLRLAAEQLVTDGAAVVAEAIGWARERLAHGPVLIAASGT
PQEVAAVQARHGRHASGLAIEQASAALAAGLVEAGVRRLVVAGGETSGACVDRLGIAGFEVGPEIAAGVPLLRTVAYAPQ
MLLALKSGNFGGPDFFARAFAAMS

Sequences:

>Translated_424_residues
MTLLLGCIADDYTGASDLANTLTKAGLRTVQTIGVPAADFALPDVDAVVVALKSRSIPATEAVALSRGARDFLGGEGARH
ILFKICSTFDSTDAGNIGPVTDALRADASAGPVLVTPAFPETGRTVYFGHLFVGAVPLNESPLKDHPLNPMTDANLVRVM
ARQSAAPVGLVDLHTVARGPEAVRSRLAVLAQEGKGAAIIDAVFERDLETIGAVALDEPLSVGASGLGLGLARTLAAGRT
APTDGAVRWGASVPGAIAAIAGSCSAATLEQIARAEENMPVLRLAAEQLVTDGAAVVAEAIGWARERLAHGPVLIAASGT
PQEVAAVQARHGRHASGLAIEQASAALAAGLVEAGVRRLVVAGGETSGACVDRLGIAGFEVGPEIAAGVPLLRTVAYAPQ
MLLALKSGNFGGPDFFARAFAAMS
>Mature_423_residues
TLLLGCIADDYTGASDLANTLTKAGLRTVQTIGVPAADFALPDVDAVVVALKSRSIPATEAVALSRGARDFLGGEGARHI
LFKICSTFDSTDAGNIGPVTDALRADASAGPVLVTPAFPETGRTVYFGHLFVGAVPLNESPLKDHPLNPMTDANLVRVMA
RQSAAPVGLVDLHTVARGPEAVRSRLAVLAQEGKGAAIIDAVFERDLETIGAVALDEPLSVGASGLGLGLARTLAAGRTA
PTDGAVRWGASVPGAIAAIAGSCSAATLEQIARAEENMPVLRLAAEQLVTDGAAVVAEAIGWARERLAHGPVLIAASGTP
QEVAAVQARHGRHASGLAIEQASAALAAGLVEAGVRRLVVAGGETSGACVDRLGIAGFEVGPEIAAGVPLLRTVAYAPQM
LLALKSGNFGGPDFFARAFAAMS

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=386, Percent_Identity=41.9689119170984, Blast_Score=258, Evalue=4e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 42943; Mature: 42811

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLLGCIADDYTGASDLANTLTKAGLRTVQTIGVPAADFALPDVDAVVVALKSRSIPAT
CEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCHH
EAVALSRGARDFLGGEGARHILFKICSTFDSTDAGNIGPVTDALRADASAGPVLVTPAFP
HHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCC
ETGRTVYFGHLFVGAVPLNESPLKDHPLNPMTDANLVRVMARQSAAPVGLVDLHTVARGP
CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCH
EAVRSRLAVLAQEGKGAAIIDAVFERDLETIGAVALDEPLSVGASGLGLGLARTLAAGRT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHCCCC
APTDGAVRWGASVPGAIAAIAGSCSAATLEQIARAEENMPVLRLAAEQLVTDGAAVVAEA
CCCCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHH
IGWARERLAHGPVLIAASGTPQEVAAVQARHGRHASGLAIEQASAALAAGLVEAGVRRLV
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
VAGGETSGACVDRLGIAGFEVGPEIAAGVPLLRTVAYAPQMLLALKSGNFGGPDFFARAF
EECCCCCCHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH
AAMS
HHCC
>Mature Secondary Structure 
TLLLGCIADDYTGASDLANTLTKAGLRTVQTIGVPAADFALPDVDAVVVALKSRSIPAT
EEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCHH
EAVALSRGARDFLGGEGARHILFKICSTFDSTDAGNIGPVTDALRADASAGPVLVTPAFP
HHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCC
ETGRTVYFGHLFVGAVPLNESPLKDHPLNPMTDANLVRVMARQSAAPVGLVDLHTVARGP
CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCH
EAVRSRLAVLAQEGKGAAIIDAVFERDLETIGAVALDEPLSVGASGLGLGLARTLAAGRT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHCCCC
APTDGAVRWGASVPGAIAAIAGSCSAATLEQIARAEENMPVLRLAAEQLVTDGAAVVAEA
CCCCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHH
IGWARERLAHGPVLIAASGTPQEVAAVQARHGRHASGLAIEQASAALAAGLVEAGVRRLV
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
VAGGETSGACVDRLGIAGFEVGPEIAAGVPLLRTVAYAPQMLLALKSGNFGGPDFFARAF
EECCCCCCHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH
AAMS
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]