| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is menE [H]
Identifier: 158424396
GI number: 158424396
Start: 3152810
End: 3154402
Strand: Direct
Name: menE [H]
Synonym: AZC_2772
Alternate gene names: 158424396
Gene position: 3152810-3154402 (Clockwise)
Preceding gene: 158424393
Following gene: 158424398
Centisome position: 58.71
GC content: 67.73
Gene sequence:
>1593_bases GTGGTCGGGTGCGACCGTCGGTACCAGCGCAAGGTCATGCGCGGAGATGACATGAGATCGAGTCTTCCCTCTCCGCCCCC CAACCGCTGGCGCAACCTCGGCGACCTGATCGACCGCGGCGGAGACCTCTCGCGACCGGCCCTGATCGACCTTTCCACCG CGCCACCGCGCGTCCTGACCCATGCCGAAGCCGACCGGCTCATCAATGGCGTTGCCCGCTTCCTGACCGATCGGGGACTG AAGCGGGGAGACCGCGTCGCCATCCTCTCGTCCAACCGCGCGGAGGTGCTGCTGAGCTATTTCGGCATCATGCGCGCCGG CTTCATCGCCGTCCCCATGAACGTGAAGCTCCCGCGGGACATGATCGACTACGTGGTGACCGACTCCGGTGCCCTCTTCG CCTTCACCGACCGGGCAAACCGGCCGCTCGTGCAGGGCGCGGTGACCTTTCTCGATTTTGACGACGATGGCCCGTCCGGC TTCCACGCCGCCATCACCCCCTGCGATTTCGCGACCGTACCCATGGCGGAGGGAGAGATCGCGCAGATGCTCTACACCTC GGGCTCCACCGGCCGGCCCAAGGGCGTACCCCTCTCGCATTCGGGCCAGCTCTGGTCGCTCGACATGCGCACCTCCGACG GCACGCGGCGGGAGGACCAGCGCTATCTCATCGCCCAGCCCCTGTTCCACATGAACGGGCTGTTCTCCGCCAAGACGGCC TTTGCCACCAACGCCTCCATCGTGCTGATGCCGGCCTTCGACGTGCGGCCCTATGTGGACGCCATCGCCACCTATGACGT GACCGCGCTTTCCAGCGTGCCGACCATGTTCGCGCGGATCGTCAAGGATGCGGACTATGTGGCGAGCCGGGACATGACGA GCCTCAAGCGCATCATGATGGGATCGGCCCCGACCACGGCGACGCTGTTCTCGTCCGTCGCGGCGCTGTTTCCGCAGGCG ACGCTGGTCCTCACCTTCGGCGCAACCGAGACCGGCCCTGCCATCTTCGGCCCGCATCCGGATGGACGGCCCACGCCACC GGTGTCGCTGGGCACGCCTGTTCCGGGCACGCAGGTGCGCCTCGTGGATGGACCGGATGCGGATGAGGGCGTGCTCTGGG TCCGCAACCCGGCGATCATGCCCGGCTATCATCGCAAGCCGGAGCTGACCGCGGCCGTGCTCAAGGACGGCTGGTACGTG ACGGGCGACATCCTGCGCCGGGATGCGGAGGGCTTCTATTACTTCGTGGGGCGCGCGGACGACATGTTCGTCTGCGGTGG CGAGAACATCTATCCGGTGGAGGTCGAGCGCCTACTGGAACGTCATCCCGGCGTTCAGCAGGCGGCGGTGGTGCCCTTGC CCGATGCCGAGCGCGGCCAGATGCCGGTGGCCTTCCTGGTGCCGAAGCCCGGCGCGCGCCTCAGCGCGGCCGAGGTGAAG ACCTTTACGCTGGAGAATGGCCCCGCCTACCAGCATCCCCGCCGTATCGCGCTCGTCAGCGAACTGCCCTGGGCCGGTAC CAACAAGATCGACCGCGCCGCGCTCAAGGCCGAGGCGCTGCGACGGGAGAGCGAGCAGCGCTGGGCGTCGTGA
Upstream 100 bases:
>100_bases GGAAACCGCATGCCGCAAAGGTATGAGAGGGTCTTCGCGACCATGGGCTTGGCCTTCGGTATCGGACGACTAAGATGCGC CGGCCGGACCACAGGGAGAG
Downstream 100 bases:
>100_bases GCGCGGTCAGCGCGCCATGTAGGTGGTGGGGATGGCCGTCGTGAACTTCATCTCCTCCATGGCCAGCGATGAGGAGAGGT TGGAGAATTCCAGCTTCGAG
Product: AMP-dependent synthetase
Products: NA
Alternate protein names: OSB-CoA synthetase; o-succinylbenzoyl-CoA synthetase [H]
Number of amino acids: Translated: 530; Mature: 530
Protein sequence:
>530_residues MVGCDRRYQRKVMRGDDMRSSLPSPPPNRWRNLGDLIDRGGDLSRPALIDLSTAPPRVLTHAEADRLINGVARFLTDRGL KRGDRVAILSSNRAEVLLSYFGIMRAGFIAVPMNVKLPRDMIDYVVTDSGALFAFTDRANRPLVQGAVTFLDFDDDGPSG FHAAITPCDFATVPMAEGEIAQMLYTSGSTGRPKGVPLSHSGQLWSLDMRTSDGTRREDQRYLIAQPLFHMNGLFSAKTA FATNASIVLMPAFDVRPYVDAIATYDVTALSSVPTMFARIVKDADYVASRDMTSLKRIMMGSAPTTATLFSSVAALFPQA TLVLTFGATETGPAIFGPHPDGRPTPPVSLGTPVPGTQVRLVDGPDADEGVLWVRNPAIMPGYHRKPELTAAVLKDGWYV TGDILRRDAEGFYYFVGRADDMFVCGGENIYPVEVERLLERHPGVQQAAVVPLPDAERGQMPVAFLVPKPGARLSAAEVK TFTLENGPAYQHPRRIALVSELPWAGTNKIDRAALKAEALRRESEQRWAS
Sequences:
>Translated_530_residues MVGCDRRYQRKVMRGDDMRSSLPSPPPNRWRNLGDLIDRGGDLSRPALIDLSTAPPRVLTHAEADRLINGVARFLTDRGL KRGDRVAILSSNRAEVLLSYFGIMRAGFIAVPMNVKLPRDMIDYVVTDSGALFAFTDRANRPLVQGAVTFLDFDDDGPSG FHAAITPCDFATVPMAEGEIAQMLYTSGSTGRPKGVPLSHSGQLWSLDMRTSDGTRREDQRYLIAQPLFHMNGLFSAKTA FATNASIVLMPAFDVRPYVDAIATYDVTALSSVPTMFARIVKDADYVASRDMTSLKRIMMGSAPTTATLFSSVAALFPQA TLVLTFGATETGPAIFGPHPDGRPTPPVSLGTPVPGTQVRLVDGPDADEGVLWVRNPAIMPGYHRKPELTAAVLKDGWYV TGDILRRDAEGFYYFVGRADDMFVCGGENIYPVEVERLLERHPGVQQAAVVPLPDAERGQMPVAFLVPKPGARLSAAEVK TFTLENGPAYQHPRRIALVSELPWAGTNKIDRAALKAEALRRESEQRWAS >Mature_530_residues MVGCDRRYQRKVMRGDDMRSSLPSPPPNRWRNLGDLIDRGGDLSRPALIDLSTAPPRVLTHAEADRLINGVARFLTDRGL KRGDRVAILSSNRAEVLLSYFGIMRAGFIAVPMNVKLPRDMIDYVVTDSGALFAFTDRANRPLVQGAVTFLDFDDDGPSG FHAAITPCDFATVPMAEGEIAQMLYTSGSTGRPKGVPLSHSGQLWSLDMRTSDGTRREDQRYLIAQPLFHMNGLFSAKTA FATNASIVLMPAFDVRPYVDAIATYDVTALSSVPTMFARIVKDADYVASRDMTSLKRIMMGSAPTTATLFSSVAALFPQA TLVLTFGATETGPAIFGPHPDGRPTPPVSLGTPVPGTQVRLVDGPDADEGVLWVRNPAIMPGYHRKPELTAAVLKDGWYV TGDILRRDAEGFYYFVGRADDMFVCGGENIYPVEVERLLERHPGVQQAAVVPLPDAERGQMPVAFLVPKPGARLSAAEVK TFTLENGPAYQHPRRIALVSELPWAGTNKIDRAALKAEALRRESEQRWAS
Specific function: Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl- CoA (OSB-CoA) [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=516, Percent_Identity=26.3565891472868, Blast_Score=159, Evalue=8e-39, Organism=Homo sapiens, GI187761345, Length=520, Percent_Identity=27.1153846153846, Blast_Score=150, Evalue=4e-36, Organism=Homo sapiens, GI187761343, Length=520, Percent_Identity=27.1153846153846, Blast_Score=150, Evalue=4e-36, Organism=Homo sapiens, GI42544132, Length=547, Percent_Identity=24.4972577696526, Blast_Score=140, Evalue=2e-33, Organism=Homo sapiens, GI122937307, Length=482, Percent_Identity=27.5933609958506, Blast_Score=132, Evalue=8e-31, Organism=Homo sapiens, GI38505220, Length=476, Percent_Identity=26.6806722689076, Blast_Score=129, Evalue=7e-30, Organism=Homo sapiens, GI58082049, Length=491, Percent_Identity=25.8655804480652, Blast_Score=126, Evalue=4e-29, Organism=Homo sapiens, GI157311624, Length=489, Percent_Identity=25.5623721881391, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI157311622, Length=489, Percent_Identity=25.5623721881391, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI115511026, Length=486, Percent_Identity=26.3374485596708, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI8923896, Length=359, Percent_Identity=27.8551532033426, Blast_Score=90, Evalue=6e-18, Organism=Homo sapiens, GI253970489, Length=359, Percent_Identity=27.8551532033426, Blast_Score=90, Evalue=7e-18, Organism=Homo sapiens, GI28416953, Length=511, Percent_Identity=23.8747553816047, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI13236579, Length=488, Percent_Identity=25.2049180327869, Blast_Score=82, Evalue=9e-16, Organism=Homo sapiens, GI13375727, Length=538, Percent_Identity=23.4200743494424, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1788107, Length=546, Percent_Identity=28.021978021978, Blast_Score=173, Evalue=2e-44, Organism=Escherichia coli, GI221142682, Length=484, Percent_Identity=27.2727272727273, Blast_Score=165, Evalue=9e-42, Organism=Escherichia coli, GI145693145, Length=495, Percent_Identity=25.8585858585859, Blast_Score=143, Evalue=3e-35, Organism=Escherichia coli, GI1786810, Length=516, Percent_Identity=26.5503875968992, Blast_Score=138, Evalue=1e-33, Organism=Escherichia coli, GI1788595, Length=470, Percent_Identity=27.2340425531915, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1789201, Length=366, Percent_Identity=28.6885245901639, Blast_Score=102, Evalue=8e-23, Organism=Escherichia coli, GI1786801, Length=504, Percent_Identity=25.1984126984127, Blast_Score=92, Evalue=8e-20, Organism=Escherichia coli, GI1786529, Length=576, Percent_Identity=24.4791666666667, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1790505, Length=369, Percent_Identity=25.7452574525745, Blast_Score=84, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17531443, Length=484, Percent_Identity=26.2396694214876, Blast_Score=159, Evalue=5e-39, Organism=Caenorhabditis elegans, GI17560308, Length=517, Percent_Identity=25.3384912959381, Blast_Score=144, Evalue=9e-35, Organism=Caenorhabditis elegans, GI17558820, Length=495, Percent_Identity=25.0505050505051, Blast_Score=142, Evalue=6e-34, Organism=Caenorhabditis elegans, GI71994690, Length=499, Percent_Identity=26.0521042084168, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI71994703, Length=499, Percent_Identity=26.0521042084168, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI71994694, Length=499, Percent_Identity=26.0521042084168, Blast_Score=138, Evalue=6e-33, Organism=Caenorhabditis elegans, GI17557194, Length=511, Percent_Identity=26.614481409002, Blast_Score=137, Evalue=1e-32, Organism=Caenorhabditis elegans, GI32563687, Length=471, Percent_Identity=23.9915074309979, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17559526, Length=352, Percent_Identity=28.9772727272727, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17538037, Length=520, Percent_Identity=24.8076923076923, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI71996755, Length=474, Percent_Identity=24.8945147679325, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560140, Length=352, Percent_Identity=26.1363636363636, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71985884, Length=358, Percent_Identity=25.6983240223464, Blast_Score=111, Evalue=7e-25, Organism=Caenorhabditis elegans, GI71982997, Length=375, Percent_Identity=28.5333333333333, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71983001, Length=375, Percent_Identity=28.5333333333333, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17556356, Length=485, Percent_Identity=22.4742268041237, Blast_Score=74, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6319699, Length=487, Percent_Identity=24.6406570841889, Blast_Score=116, Evalue=9e-27, Organism=Saccharomyces cerevisiae, GI6323182, Length=553, Percent_Identity=26.0397830018083, Blast_Score=100, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6319264, Length=548, Percent_Identity=26.4598540145985, Blast_Score=96, Evalue=9e-21, Organism=Drosophila melanogaster, GI21355181, Length=490, Percent_Identity=25.5102040816327, Blast_Score=137, Evalue=2e-32, Organism=Drosophila melanogaster, GI24581924, Length=398, Percent_Identity=26.1306532663317, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI18859661, Length=488, Percent_Identity=24.5901639344262, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI21356441, Length=508, Percent_Identity=24.6062992125984, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI19922652, Length=515, Percent_Identity=22.9126213592233, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI62472339, Length=525, Percent_Identity=24.952380952381, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI24667955, Length=525, Percent_Identity=24.952380952381, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI21356947, Length=467, Percent_Identity=23.982869379015, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI21358303, Length=535, Percent_Identity=23.1775700934579, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24667959, Length=363, Percent_Identity=27.8236914600551, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI24648253, Length=497, Percent_Identity=24.748490945674, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI281365686, Length=350, Percent_Identity=25.1428571428571, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24648255, Length=503, Percent_Identity=24.0556660039761, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24648260, Length=516, Percent_Identity=22.8682170542636, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24648257, Length=525, Percent_Identity=24.7619047619048, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24656500, Length=477, Percent_Identity=23.4800838574423, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24653035, Length=458, Percent_Identity=24.4541484716157, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI21355225, Length=387, Percent_Identity=26.8733850129199, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI20130357, Length=468, Percent_Identity=23.0769230769231, Blast_Score=86, Evalue=7e-17, Organism=Drosophila melanogaster, GI24583465, Length=518, Percent_Identity=24.1312741312741, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI24583463, Length=518, Percent_Identity=24.1312741312741, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI281364798, Length=518, Percent_Identity=24.1312741312741, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI161076582, Length=451, Percent_Identity=23.2815964523282, Blast_Score=79, Evalue=9e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR010192 - InterPro: IPR023015 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.26 [H]
Molecular weight: Translated: 57919; Mature: 57919
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGCDRRYQRKVMRGDDMRSSLPSPPPNRWRNLGDLIDRGGDLSRPALIDLSTAPPRVLT CCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH HAEADRLINGVARFLTDRGLKRGDRVAILSSNRAEVLLSYFGIMRAGFIAVPMNVKLPRD HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCHH MIDYVVTDSGALFAFTDRANRPLVQGAVTFLDFDDDGPSGFHAAITPCDFATVPMAEGEI HHHEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHH AQMLYTSGSTGRPKGVPLSHSGQLWSLDMRTSDGTRREDQRYLIAQPLFHMNGLFSAKTA HHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHCCCCHHHHH FATNASIVLMPAFDVRPYVDAIATYDVTALSSVPTMFARIVKDADYVASRDMTSLKRIMM HCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GSAPTTATLFSSVAALFPQATLVLTFGATETGPAIFGPHPDGRPTPPVSLGTPVPGTQVR CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE LVDGPDADEGVLWVRNPAIMPGYHRKPELTAAVLKDGWYVTGDILRRDAEGFYYFVGRAD EECCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEHHHHHCCCCCEEEEEECCC DMFVCGGENIYPVEVERLLERHPGVQQAAVVPLPDAERGQMPVAFLVPKPGARLSAAEVK CEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEE TFTLENGPAYQHPRRIALVSELPWAGTNKIDRAALKAEALRRESEQRWAS EEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVGCDRRYQRKVMRGDDMRSSLPSPPPNRWRNLGDLIDRGGDLSRPALIDLSTAPPRVLT CCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH HAEADRLINGVARFLTDRGLKRGDRVAILSSNRAEVLLSYFGIMRAGFIAVPMNVKLPRD HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCHH MIDYVVTDSGALFAFTDRANRPLVQGAVTFLDFDDDGPSGFHAAITPCDFATVPMAEGEI HHHEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHH AQMLYTSGSTGRPKGVPLSHSGQLWSLDMRTSDGTRREDQRYLIAQPLFHMNGLFSAKTA HHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHCCCCHHHHH FATNASIVLMPAFDVRPYVDAIATYDVTALSSVPTMFARIVKDADYVASRDMTSLKRIMM HCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GSAPTTATLFSSVAALFPQATLVLTFGATETGPAIFGPHPDGRPTPPVSLGTPVPGTQVR CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE LVDGPDADEGVLWVRNPAIMPGYHRKPELTAAVLKDGWYVTGDILRRDAEGFYYFVGRAD EECCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEHHHHHCCCCCEEEEEECCC DMFVCGGENIYPVEVERLLERHPGVQQAAVVPLPDAERGQMPVAFLVPKPGARLSAAEVK CEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEE TFTLENGPAYQHPRRIALVSELPWAGTNKIDRAALKAEALRRESEQRWAS EEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA