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The map label for this gene is araC [H]

Identifier: 158424325

GI number: 158424325

Start: 3061836

End: 3062843

Strand: Direct

Name: araC [H]

Synonym: AZC_2701

Alternate gene names: 158424325

Gene position: 3061836-3062843 (Clockwise)

Preceding gene: 158424324

Following gene: 158424326

Centisome position: 57.02

GC content: 70.14

Gene sequence:

>1008_bases
ATGAGCACCCGGCGCCCCGCACGGATCATTCCGGTCCTCGCGGTGGTGCCGCCGCGGGCGCTCCTGCTCGACCTTGCGGG
CCCCATCGAAGTCCTGCGCCAGGCCAATCAGGCGCAGGACGACGTGCGGTTCGACGTGACGTACGTGGGTCCGTCGGAAC
AGGTGCACAGCTCCATCGGGCTGCCGCTCGCCGGCATTCGTCCCCTGCCCCGCTCGGTGCCGGACGGCGCGCTCGTCCTC
GTCTCTGGGGCCGTGGAGACGCCGCTCGGCTCTCCATCCTCGACGGCAGCACAGGACGAGGCGGACGCAGCGTCCATCGT
CGAGTGGCTGCGCACGGCCATCCGCCCGCAGGTGCGTCTCGCCACCATCTGCTCGGGCGCGCTGCTGGCTGCCCGCGCCG
GGCTTTTGGATGGCTATGACTGCACCACCCATTTCGGAACGCTGGCACAGCTCGCCGCCCTCGCCCCACACGCCCGTGTC
CGGGAGAACCGACTCTATGTGGAAGATCGCGGCCGCCTGACCAGCGCCGGCGTCACCGCCGGCATCGATCTCATGCTCGC
CTTCGTGGCGCGCGAGGTGGGCCACGCGACGGCCGTCGCCGCGGCCCGCATGCTGGTGGTCTATCTGCGGCGCGGCGGCG
GCGACCCGCAGTTGTCTCCCTGGCTCGAGGGACGCAACCATATCCATCCGGCCATCCATAGAGCGCAGGATGCGGTGGGT
GCCGATCCCGCTCGCGACTGGTCCGTCGAGGCGATGGCCGACGTGGCCGGCACCAGCCCGCGCAACCTCTCGCGCCTGTT
CAACGAACATGCGGGCATGAGCGTCACGGAATATGTGAACCGCATGCGCATTGCGCTCGCCCACGACATGGTGGTGCATT
CGCGTCTCGACATGGACGCCATCGCCGAAAGCTCCGGCTTTTCCTCTGCCCGCCAGTTCCGCCGCGCGTGGAACCGCCTG
CAGGCCGTACCTCCGGGCCAGTTGCGCGCCCAGCTCGCGCAGGGCTGA

Upstream 100 bases:

>100_bases
CCGACATCCGCGCCCGCACCGAGCTCGTGCTCGATGGACGCTTCGCGCGGATCGCCAGCGTTGCGGAGGCTCTCTCCGGC
CGCGCGTCGCGGCAGGCGGC

Downstream 100 bases:

>100_bases
TACGGCCGGTGAGCCGGGCCTCAGCACATCCTGGGACAGCCGAACGTGCGGCACAGCCATCACATGCCCGCAAAACGTGT
GGCGACAGCCCCTTGACGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSTRRPARIIPVLAVVPPRALLLDLAGPIEVLRQANQAQDDVRFDVTYVGPSEQVHSSIGLPLAGIRPLPRSVPDGALVL
VSGAVETPLGSPSSTAAQDEADAASIVEWLRTAIRPQVRLATICSGALLAARAGLLDGYDCTTHFGTLAQLAALAPHARV
RENRLYVEDRGRLTSAGVTAGIDLMLAFVAREVGHATAVAAARMLVVYLRRGGGDPQLSPWLEGRNHIHPAIHRAQDAVG
ADPARDWSVEAMADVAGTSPRNLSRLFNEHAGMSVTEYVNRMRIALAHDMVVHSRLDMDAIAESSGFSSARQFRRAWNRL
QAVPPGQLRAQLAQG

Sequences:

>Translated_335_residues
MSTRRPARIIPVLAVVPPRALLLDLAGPIEVLRQANQAQDDVRFDVTYVGPSEQVHSSIGLPLAGIRPLPRSVPDGALVL
VSGAVETPLGSPSSTAAQDEADAASIVEWLRTAIRPQVRLATICSGALLAARAGLLDGYDCTTHFGTLAQLAALAPHARV
RENRLYVEDRGRLTSAGVTAGIDLMLAFVAREVGHATAVAAARMLVVYLRRGGGDPQLSPWLEGRNHIHPAIHRAQDAVG
ADPARDWSVEAMADVAGTSPRNLSRLFNEHAGMSVTEYVNRMRIALAHDMVVHSRLDMDAIAESSGFSSARQFRRAWNRL
QAVPPGQLRAQLAQG
>Mature_334_residues
STRRPARIIPVLAVVPPRALLLDLAGPIEVLRQANQAQDDVRFDVTYVGPSEQVHSSIGLPLAGIRPLPRSVPDGALVLV
SGAVETPLGSPSSTAAQDEADAASIVEWLRTAIRPQVRLATICSGALLAARAGLLDGYDCTTHFGTLAQLAALAPHARVR
ENRLYVEDRGRLTSAGVTAGIDLMLAFVAREVGHATAVAAARMLVVYLRRGGGDPQLSPWLEGRNHIHPAIHRAQDAVGA
DPARDWSVEAMADVAGTSPRNLSRLFNEHAGMSVTEYVNRMRIALAHDMVVHSRLDMDAIAESSGFSSARQFRRAWNRLQ
AVPPGQLRAQLAQG

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35869; Mature: 35738

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRRPARIIPVLAVVPPRALLLDLAGPIEVLRQANQAQDDVRFDVTYVGPSEQVHSSIG
CCCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCC
LPLAGIRPLPRSVPDGALVLVSGAVETPLGSPSSTAAQDEADAASIVEWLRTAIRPQVRL
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
ATICSGALLAARAGLLDGYDCTTHFGTLAQLAALAPHARVRENRLYVEDRGRLTSAGVTA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHCCEEEEECCCCEECCCHHH
GIDLMLAFVAREVGHATAVAAARMLVVYLRRGGGDPQLSPWLEGRNHIHPAIHRAQDAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHCC
ADPARDWSVEAMADVAGTSPRNLSRLFNEHAGMSVTEYVNRMRIALAHDMVVHSRLDMDA
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
IAESSGFSSARQFRRAWNRLQAVPPGQLRAQLAQG
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure 
STRRPARIIPVLAVVPPRALLLDLAGPIEVLRQANQAQDDVRFDVTYVGPSEQVHSSIG
CCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCC
LPLAGIRPLPRSVPDGALVLVSGAVETPLGSPSSTAAQDEADAASIVEWLRTAIRPQVRL
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
ATICSGALLAARAGLLDGYDCTTHFGTLAQLAALAPHARVRENRLYVEDRGRLTSAGVTA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHCCEEEEECCCCEECCCHHH
GIDLMLAFVAREVGHATAVAAARMLVVYLRRGGGDPQLSPWLEGRNHIHPAIHRAQDAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHCC
ADPARDWSVEAMADVAGTSPRNLSRLFNEHAGMSVTEYVNRMRIALAHDMVVHSRLDMDA
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
IAESSGFSSARQFRRAWNRLQAVPPGQLRAQLAQG
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]