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The map label for this gene is dppB [C]

Identifier: 158424284

GI number: 158424284

Start: 3014246

End: 3015259

Strand: Direct

Name: dppB [C]

Synonym: AZC_2660

Alternate gene names: 158424284

Gene position: 3014246-3015259 (Clockwise)

Preceding gene: 158424283

Following gene: 158424285

Centisome position: 56.13

GC content: 67.55

Gene sequence:

>1014_bases
GTGATCCGGCTTTCAGGAGACACATCCATGCCCGGACCGCTGCGCGTCGCAAAGGCGCTCCGTCGCACCGCCCTCCAGGC
CGTGCCGACGGTCCTCATCATCGTGATCCTGAATTTCTTCCTGCTGCGCCTCGCCCCCGGCGACGCAGCCGAAGTGATGG
CGGGGGAAGCGGGCTCGGCCACCGCCGAGACGCTTGCCGCCCTGCGCAACCGCTTCGGGCTCGATCTGCCGGTGCTGCAG
CAACTGGCGGATTATCTCTGGACGCTCGCCCATTTCAGCCTCGGAGACTCCCCGCGCTACAACATGCCGGTGGCAGCCCT
CATCGGCCAGCGGCTGCCCAACACGCTGGCGCTCATGGCGCTGGCGCTCGGCCTCGCGCTCGTCATCGGCATCGCGCTGG
GCGCCCTCATGGCGAGCTTCGTCGGCCGCCTGCCGGACCGCGTGCTCTCGGTGCTTGCGCTGCTGTTCTATTCCATCCCC
AGCTTCTGGATCGGCCTCATGCTGATCGTGCTGTTCTCCGTGAAGCTCGGCTGGCTGCCCAGTGGCGGGGCCGAAAGCAT
CGGCGCCGGCTATACGGGTTGGGAGGCGTTCGTTGATCGCCTGCGCTTCATGGTGCTGCCGGGCCTGTCGCTGGCCCTGT
TCTATGTGGCCATCTATGCCCGCCTGACGCGCGGCGACATGCTGGAAGTACGGGCGCAGGATTATGTGCGCACCGCGCAG
GCCAAGGGCCTGCCGCCCTTCGCCGTCACCACTCGCCATGTGCTGCGCAATGCGCTGCTGCCTGTCACCACCATGGCCGG
CATCCATCTCGGCGGCCTCATGGGCGGGGCCGTGGTGGTGGAGACGGTCTATAGCTGGCCGGGTCTCGGCCGCCTCGCCT
ATGAGGCGGTGATGGGCCGCGACTTCAACGTGCTGCTCGGCATCCTCCTTCTCTCGTCCCTGCTGGTGGTCGCGGTCAAT
GCGTTGATCGACCTCTTCCAGGCCTGGCTCGACCCGCGGATCGAGGTGCGCTGA

Upstream 100 bases:

>100_bases
TCTCGCCGGCGGGCGTCACCCTCTTCAACAAGAAGGTGAAGAACCACACGCTGGGCGTGACGGGCGTGAACGCCAGCTTC
GCCGACGTTTATTTCGAGAA

Downstream 100 bases:

>100_bases
TGACCAAGAGCCAAGCCCTCCCCGCTCCCGCCACGCTGGAGCATCCGTCCTCCGGCCCCGCCGCCCTCCCGGCCGCCGGC
ACCGGCGATCTCGCCAACTG

Product: ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MIRLSGDTSMPGPLRVAKALRRTALQAVPTVLIIVILNFFLLRLAPGDAAEVMAGEAGSATAETLAALRNRFGLDLPVLQ
QLADYLWTLAHFSLGDSPRYNMPVAALIGQRLPNTLALMALALGLALVIGIALGALMASFVGRLPDRVLSVLALLFYSIP
SFWIGLMLIVLFSVKLGWLPSGGAESIGAGYTGWEAFVDRLRFMVLPGLSLALFYVAIYARLTRGDMLEVRAQDYVRTAQ
AKGLPPFAVTTRHVLRNALLPVTTMAGIHLGGLMGGAVVVETVYSWPGLGRLAYEAVMGRDFNVLLGILLLSSLLVVAVN
ALIDLFQAWLDPRIEVR

Sequences:

>Translated_337_residues
MIRLSGDTSMPGPLRVAKALRRTALQAVPTVLIIVILNFFLLRLAPGDAAEVMAGEAGSATAETLAALRNRFGLDLPVLQ
QLADYLWTLAHFSLGDSPRYNMPVAALIGQRLPNTLALMALALGLALVIGIALGALMASFVGRLPDRVLSVLALLFYSIP
SFWIGLMLIVLFSVKLGWLPSGGAESIGAGYTGWEAFVDRLRFMVLPGLSLALFYVAIYARLTRGDMLEVRAQDYVRTAQ
AKGLPPFAVTTRHVLRNALLPVTTMAGIHLGGLMGGAVVVETVYSWPGLGRLAYEAVMGRDFNVLLGILLLSSLLVVAVN
ALIDLFQAWLDPRIEVR
>Mature_337_residues
MIRLSGDTSMPGPLRVAKALRRTALQAVPTVLIIVILNFFLLRLAPGDAAEVMAGEAGSATAETLAALRNRFGLDLPVLQ
QLADYLWTLAHFSLGDSPRYNMPVAALIGQRLPNTLALMALALGLALVIGIALGALMASFVGRLPDRVLSVLALLFYSIP
SFWIGLMLIVLFSVKLGWLPSGGAESIGAGYTGWEAFVDRLRFMVLPGLSLALFYVAIYARLTRGDMLEVRAQDYVRTAQ
AKGLPPFAVTTRHVLRNALLPVTTMAGIHLGGLMGGAVVVETVYSWPGLGRLAYEAVMGRDFNVLLGILLLSSLLVVAVN
ALIDLFQAWLDPRIEVR

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=38.5074626865672, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=37.0967741935484, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=37.4603174603175, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=35.1097178683386, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=36.969696969697, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787550, Length=261, Percent_Identity=32.183908045977, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788504, Length=358, Percent_Identity=27.3743016759777, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36265; Mature: 36265

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLSGDTSMPGPLRVAKALRRTALQAVPTVLIIVILNFFLLRLAPGDAAEVMAGEAGSA
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCH
TAETLAALRNRFGLDLPVLQQLADYLWTLAHFSLGDSPRYNMPVAALIGQRLPNTLALMA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHH
LALGLALVIGIALGALMASFVGRLPDRVLSVLALLFYSIPSFWIGLMLIVLFSVKLGWLP
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGGAESIGAGYTGWEAFVDRLRFMVLPGLSLALFYVAIYARLTRGDMLEVRAQDYVRTAQ
CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AKGLPPFAVTTRHVLRNALLPVTTMAGIHLGGLMGGAVVVETVYSWPGLGRLAYEAVMGR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
DFNVLLGILLLSSLLVVAVNALIDLFQAWLDPRIEVR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIRLSGDTSMPGPLRVAKALRRTALQAVPTVLIIVILNFFLLRLAPGDAAEVMAGEAGSA
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCH
TAETLAALRNRFGLDLPVLQQLADYLWTLAHFSLGDSPRYNMPVAALIGQRLPNTLALMA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHH
LALGLALVIGIALGALMASFVGRLPDRVLSVLALLFYSIPSFWIGLMLIVLFSVKLGWLP
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGGAESIGAGYTGWEAFVDRLRFMVLPGLSLALFYVAIYARLTRGDMLEVRAQDYVRTAQ
CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AKGLPPFAVTTRHVLRNALLPVTTMAGIHLGGLMGGAVVVETVYSWPGLGRLAYEAVMGR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
DFNVLLGILLLSSLLVVAVNALIDLFQAWLDPRIEVR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]