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The map label for this gene is gntR [H]

Identifier: 158424107

GI number: 158424107

Start: 2820174

End: 2820908

Strand: Reverse

Name: gntR [H]

Synonym: AZC_2483

Alternate gene names: 158424107

Gene position: 2820908-2820174 (Counterclockwise)

Preceding gene: 158424114

Following gene: 158424106

Centisome position: 52.53

GC content: 66.94

Gene sequence:

>735_bases
TTGCATGCTCATTTTTTATGCGGTCCATGCCCCGAGAACAGCAGGAGCACGCTGAGGATGGTCACGGAGACAGACGCGGG
AACGGCCGCACCCCGCCTGACCGAAGTGGCCTATCGCCAGTTGCTCGACATGATCCTGAGCGGCGCGCTGGAAGCCGGTT
CGCTGGTGCAGGAGCGCAAGCTTGCCAAGCAACTCGACGTCTCCCGCACGCCTTTGCGCGATGCGCTCTTTCGCCTCGAA
GGCGAAGGACTGCTGATCCGGCGCGGCGAAGGTGCGCTACAGGTCAAGACCGTGACGCTGGAGGATTACAGCCACGCCTT
GCGGGTGCGCCTCGTGCTGGAGCGGGAAGCCGCGCGCCTGGCTGCCGGCCATGTCCCGCCGGTGACCCTTGCGGCGCTGC
GGGCGCGGATCGAGGCGGTGACGCAGCATGAGGAGGGCGACGATCCCCATCCCAGCCGCACCGATCTCGATGGGACGGAC
GACGACCTGCACGACGTCGTCGCCAATGCCAGCGGCAATCCTCTGCTCGCAGAACTCATCCGGCAGGTACGCCAGCGCTC
GCGCCTCTTCGGTCTCGAACGCCGGCCGCGCCGCATCGGCGAGATCGCCCGCGAGCACCTCGCCATCCTCGACGCTGTGG
CCTCCGGCGATGCGGATGCGGCCGAACAGGCCATGGCGCGCCACATCGGCAATGTGATGGAAGATCTGCGCCAGCGCTTC
TTTGATCGCCGCTGA

Upstream 100 bases:

>100_bases
TGCGTCGCCACCCGCCGGGTCCGCTACGCCTTGCGCAGTGGGGCTTTGCAAGGGGTGCGAGAAATAGTATGCCGGTGGTA
TTCCATGTCGGTCAATTGGA

Downstream 100 bases:

>100_bases
TCGGTGCCCTTCCGGTCTTCGGCGTGCCGTGTATGGTGCGCGCCCAAGCCGGACGAGACGATGATACCCTGGACGCTGAT
CGACACCGCACCTCTGCCGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MHAHFLCGPCPENSRSTLRMVTETDAGTAAPRLTEVAYRQLLDMILSGALEAGSLVQERKLAKQLDVSRTPLRDALFRLE
GEGLLIRRGEGALQVKTVTLEDYSHALRVRLVLEREAARLAAGHVPPVTLAALRARIEAVTQHEEGDDPHPSRTDLDGTD
DDLHDVVANASGNPLLAELIRQVRQRSRLFGLERRPRRIGEIAREHLAILDAVASGDADAAEQAMARHIGNVMEDLRQRF
FDRR

Sequences:

>Translated_244_residues
MHAHFLCGPCPENSRSTLRMVTETDAGTAAPRLTEVAYRQLLDMILSGALEAGSLVQERKLAKQLDVSRTPLRDALFRLE
GEGLLIRRGEGALQVKTVTLEDYSHALRVRLVLEREAARLAAGHVPPVTLAALRARIEAVTQHEEGDDPHPSRTDLDGTD
DDLHDVVANASGNPLLAELIRQVRQRSRLFGLERRPRRIGEIAREHLAILDAVASGDADAAEQAMARHIGNVMEDLRQRF
FDRR
>Mature_244_residues
MHAHFLCGPCPENSRSTLRMVTETDAGTAAPRLTEVAYRQLLDMILSGALEAGSLVQERKLAKQLDVSRTPLRDALFRLE
GEGLLIRRGEGALQVKTVTLEDYSHALRVRLVLEREAARLAAGHVPPVTLAALRARIEAVTQHEEGDDPHPSRTDLDGTD
DDLHDVVANASGNPLLAELIRQVRQRSRLFGLERRPRRIGEIAREHLAILDAVASGDADAAEQAMARHIGNVMEDLRQRF
FDRR

Specific function: May Be A Regulatory Protein For The Lct Genes. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=217, Percent_Identity=31.3364055299539, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786303, Length=231, Percent_Identity=29.8701298701299, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27064; Mature: 27064

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAHFLCGPCPENSRSTLRMVTETDAGTAAPRLTEVAYRQLLDMILSGALEAGSLVQERK
CCCCCCCCCCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LAKQLDVSRTPLRDALFRLEGEGLLIRRGEGALQVKTVTLEDYSHALRVRLVLEREAARL
HHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
AAGHVPPVTLAALRARIEAVTQHEEGDDPHPSRTDLDGTDDDLHDVVANASGNPLLAELI
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
RQVRQRSRLFGLERRPRRIGEIAREHLAILDAVASGDADAAEQAMARHIGNVMEDLRQRF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FDRR
CCCC
>Mature Secondary Structure
MHAHFLCGPCPENSRSTLRMVTETDAGTAAPRLTEVAYRQLLDMILSGALEAGSLVQERK
CCCCCCCCCCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LAKQLDVSRTPLRDALFRLEGEGLLIRRGEGALQVKTVTLEDYSHALRVRLVLEREAARL
HHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
AAGHVPPVTLAALRARIEAVTQHEEGDDPHPSRTDLDGTDDDLHDVVANASGNPLLAELI
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
RQVRQRSRLFGLERRPRRIGEIAREHLAILDAVASGDADAAEQAMARHIGNVMEDLRQRF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FDRR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]