Click here to switch to the map view.

The map label for this gene is chrR [H]

Identifier: 158424059

GI number: 158424059

Start: 2770571

End: 2771374

Strand: Reverse

Name: chrR [H]

Synonym: AZC_2435

Alternate gene names: 158424059

Gene position: 2771374-2770571 (Counterclockwise)

Preceding gene: 158424063

Following gene: 158424058

Centisome position: 51.61

GC content: 68.66

Gene sequence:

>804_bases
TTGTCTGTTCCTACGTCAGCGTTCCAAAGCCGGATCACTTGCCCGCGCGCTGATCCAGATCACGCCACCCGCCGTAGAAA
ATTCGCGACACATGTAGCGCCGCAGGGCGCGGGAAGCGGAAGCGTGACAGGCGAAGACAAAGGCATCGTGAACGGGCGTC
AGGTGCTCCATCACCCGAGCGACGAGACGCTGCTGGCCTATGCGGCGGGGCGGCTTGAGGTCGGACCGGCGGTGGTCACC
CAGAGCCATCTGGCATTCTGCTCCCATTGCCGGGAGCGGCTGCGGGTCTTTGCAGCCGCAGGCGGCGCCCTTCTTGACGC
CCTTCCGCCCACGGAAATGTCCGACGCTGCGCTCATCGAGACGCAGGCGCGCGCGGATGCCCCCGCCCCGCCGCCGCCCC
GCAGCCGTCCGGCGCGCCGGCAGCCCGCGGACGTGGACCTGCCGTCCGTTCTCGGAGCTTATGATTTCGGGCGATGGCGC
TGGCTCGGGCCGGGCGTGAAGGCCCGGCACATTCTGCTGCCGGGTCATCGCTTCACCGGCGCCCGGCTGCTGCGGATCGC
GCCGGGCTCCAAGATTCCCGAGCATGGGCACACCGGCACAGAGTTCACGCAGGTGATCCACGGCTCCTTCTCGGACGGCC
ATCAGGATTACCGGCCGGGCGATTTCTGCGAGGCGGACAGCGCCCTCGACCATGAGCCGGTGGCCGGGCCCGAGGGCGAC
TGCATCTGCGTCGCTGCCATCGAGGGCAGCATGCGCTTCAGCGGCGTCATCGGCCGCCTCATGCAGCCCTTCGTGGGATT
CTGA

Upstream 100 bases:

>100_bases
GCGATGCGCAGGGGGCGGTCGGCTCCGGGTGCACGCAGCGAACTCATTGATATGACCTTGTTTTGGAGAGCGGGCCTGCG
CCGCCGGAGAAGCCGTCAGC

Downstream 100 bases:

>100_bases
CGATCGCGGCATCAAGAGGGAAACGGCCCGCATGACCTATCCCGTGCTCCTTCTGCTGCTGGCGGCGATCTTCACCCTCG
CCATGTCGCTGGCCTGGGCG

Product: transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSVPTSAFQSRITCPRADPDHATRRRKFATHVAPQGAGSGSVTGEDKGIVNGRQVLHHPSDETLLAYAAGRLEVGPAVVT
QSHLAFCSHCRERLRVFAAAGGALLDALPPTEMSDAALIETQARADAPAPPPPRSRPARRQPADVDLPSVLGAYDFGRWR
WLGPGVKARHILLPGHRFTGARLLRIAPGSKIPEHGHTGTEFTQVIHGSFSDGHQDYRPGDFCEADSALDHEPVAGPEGD
CICVAAIEGSMRFSGVIGRLMQPFVGF

Sequences:

>Translated_267_residues
MSVPTSAFQSRITCPRADPDHATRRRKFATHVAPQGAGSGSVTGEDKGIVNGRQVLHHPSDETLLAYAAGRLEVGPAVVT
QSHLAFCSHCRERLRVFAAAGGALLDALPPTEMSDAALIETQARADAPAPPPPRSRPARRQPADVDLPSVLGAYDFGRWR
WLGPGVKARHILLPGHRFTGARLLRIAPGSKIPEHGHTGTEFTQVIHGSFSDGHQDYRPGDFCEADSALDHEPVAGPEGD
CICVAAIEGSMRFSGVIGRLMQPFVGF
>Mature_266_residues
SVPTSAFQSRITCPRADPDHATRRRKFATHVAPQGAGSGSVTGEDKGIVNGRQVLHHPSDETLLAYAAGRLEVGPAVVTQ
SHLAFCSHCRERLRVFAAAGGALLDALPPTEMSDAALIETQARADAPAPPPPRSRPARRQPADVDLPSVLGAYDFGRWRW
LGPGVKARHILLPGHRFTGARLLRIAPGSKIPEHGHTGTEFTQVIHGSFSDGHQDYRPGDFCEADSALDHEPVAGPEGDC
ICVAAIEGSMRFSGVIGRLMQPFVGF

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28528; Mature: 28396

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPTSAFQSRITCPRADPDHATRRRKFATHVAPQGAGSGSVTGEDKGIVNGRQVLHHPS
CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
DETLLAYAAGRLEVGPAVVTQSHLAFCSHCRERLRVFAAAGGALLDALPPTEMSDAALIE
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHEE
TQARADAPAPPPPRSRPARRQPADVDLPSVLGAYDFGRWRWLGPGVKARHILLPGHRFTG
HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCC
ARLLRIAPGSKIPEHGHTGTEFTQVIHGSFSDGHQDYRPGDFCEADSALDHEPVAGPEGD
EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CICVAAIEGSMRFSGVIGRLMQPFVGF
EEEEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVPTSAFQSRITCPRADPDHATRRRKFATHVAPQGAGSGSVTGEDKGIVNGRQVLHHPS
CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
DETLLAYAAGRLEVGPAVVTQSHLAFCSHCRERLRVFAAAGGALLDALPPTEMSDAALIE
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHEE
TQARADAPAPPPPRSRPARRQPADVDLPSVLGAYDFGRWRWLGPGVKARHILLPGHRFTG
HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCC
ARLLRIAPGSKIPEHGHTGTEFTQVIHGSFSDGHQDYRPGDFCEADSALDHEPVAGPEGD
EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CICVAAIEGSMRFSGVIGRLMQPFVGF
EEEEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]