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The map label for this gene is rpoE [H]

Identifier: 158424051

GI number: 158424051

Start: 2759438

End: 2759983

Strand: Direct

Name: rpoE [H]

Synonym: AZC_2427

Alternate gene names: 158424051

Gene position: 2759438-2759983 (Clockwise)

Preceding gene: 158424045

Following gene: 158424052

Centisome position: 51.39

GC content: 71.61

Gene sequence:

>546_bases
ATGCGTGAGCCGAGCGACGAAGATCTCATGGCCCGCGTTGCTTCCGGAGATGCGGGCGCGTTCCGCGTTCTCAGCGCGCG
CCACGCGCCGCGCGCCGTCGCGCTCGCCCGGCGCTACCTGTCCAGCGATGCCGACGCCGAGGATGTCGCGCAGGAAGCCC
TGCTGCGCGTCTGGCGCGCCGCGCCGAGCTGGCAGCCGACCGCCCGTTTCACCACCTGGTTCTACCGGATCGTCGTCAAT
CTCTGCCTCAACCAGAAGCGTCGCGCCGAGCCCGCGCCGCTCGACGACGTGCCCGAGCCCGTCGATCCGACCCCCGACGC
CGAAGCCCGCTGGGAGGAAGCCCAGGAACGGGACCGGATCGCCGACGCCGTCTCGCACCTTCCGGACCGGCAGCGCGCCG
CGCTGCTCCTCACCTATTGGGAAGGCCTTTCCAACAGCGCCGTGGCTGATGCCCTCGGCACCACCGTGGGCAGTGTCGAG
ACGCTGCTCGTGCGCGCCCGCAAGGCGCTGCGCGACCGTCTCCAGCCGCGCGAAGGGGGGAAATAG

Upstream 100 bases:

>100_bases
TCGAAGGCGCAGTTCAGACGCCTGCGAAACCAAGGGGTGGGATTGAGGAGGAATGCACCATGGTGTCATTGTGCTTCCCG
ACATGGCGTCGAGTTCCGGG

Downstream 100 bases:

>100_bases
ATCATGACGACACGCCAGAACCCGAGCGCCCCGCCGCTCGACGCCATCGACCTCGCCTTCGCTCGCCATGGCGGCGAATT
GGCGCTCTGGCCGGCCGAAG

Product: RNA polymerase

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MREPSDEDLMARVASGDAGAFRVLSARHAPRAVALARRYLSSDADAEDVAQEALLRVWRAAPSWQPTARFTTWFYRIVVN
LCLNQKRRAEPAPLDDVPEPVDPTPDAEARWEEAQERDRIADAVSHLPDRQRAALLLTYWEGLSNSAVADALGTTVGSVE
TLLVRARKALRDRLQPREGGK

Sequences:

>Translated_181_residues
MREPSDEDLMARVASGDAGAFRVLSARHAPRAVALARRYLSSDADAEDVAQEALLRVWRAAPSWQPTARFTTWFYRIVVN
LCLNQKRRAEPAPLDDVPEPVDPTPDAEARWEEAQERDRIADAVSHLPDRQRAALLLTYWEGLSNSAVADALGTTVGSVE
TLLVRARKALRDRLQPREGGK
>Mature_181_residues
MREPSDEDLMARVASGDAGAFRVLSARHAPRAVALARRYLSSDADAEDVAQEALLRVWRAAPSWQPTARFTTWFYRIVVN
LCLNQKRRAEPAPLDDVPEPVDPTPDAEARWEEAQERDRIADAVSHLPDRQRAALLLTYWEGLSNSAVADALGTTVGSVE
TLLVRARKALRDRLQPREGGK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=183, Percent_Identity=30.6010928961749, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20154; Mature: 20154

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREPSDEDLMARVASGDAGAFRVLSARHAPRAVALARRYLSSDADAEDVAQEALLRVWRA
CCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
APSWQPTARFTTWFYRIVVNLCLNQKRRAEPAPLDDVPEPVDPTPDAEARWEEAQERDRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ADAVSHLPDRQRAALLLTYWEGLSNSAVADALGTTVGSVETLLVRARKALRDRLQPREGG
HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
K
C
>Mature Secondary Structure
MREPSDEDLMARVASGDAGAFRVLSARHAPRAVALARRYLSSDADAEDVAQEALLRVWRA
CCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
APSWQPTARFTTWFYRIVVNLCLNQKRRAEPAPLDDVPEPVDPTPDAEARWEEAQERDRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ADAVSHLPDRQRAALLLTYWEGLSNSAVADALGTTVGSVETLLVRARKALRDRLQPREGG
HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]