| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is yfeW [C]
Identifier: 158423913
GI number: 158423913
Start: 2612432
End: 2614009
Strand: Direct
Name: yfeW [C]
Synonym: AZC_2289
Alternate gene names: 158423913
Gene position: 2612432-2614009 (Clockwise)
Preceding gene: 158423910
Following gene: 158423914
Centisome position: 48.65
GC content: 66.29
Gene sequence:
>1578_bases ATGTCCTGCCAAACGACCCATCGCCTTTCTCGTCTTTGCAACCGCGCTTGCCACTGCCGGTCTCGCGATGGCCGCGCCAA CCACCTCCCGTGGATTGATCTCGGTCGATCAGGTGGCGGAGATGCTGGAGAAGGCTCCAACGGATCGCACCGCGCAGCAG GTTCTCACCGCCTATCTGGCCGGCGTTGGCGAAGCCGCAAGTGCGGTCGTGACCATGGGAAATGCCGCCTGCCAGAAGCC GTTGAGCCTGAACGCGGCGAACGCTGGCCAAGCCCTCAAGGGTACAGCCTCCGATCGCGGTGCAGAAACACCTGCGACGC CGTTGATTGTCAGCGATATGCTTCATCGCGCCGGGTGCCGGCGCCAGTGAGCCGTCCCGCCCGCCGGATCGCTGACCTCG ATTGGCAGCGCAACCGGGCCGGGGCCGTGATTCGGCAGGCGCGCCTGATCCTCGCGCTGGTCGGGCTCATGAGCCTGGCG GGGGGCTCATCCGCCCATTCCGCCGACTTTGGCCCCGTTCAATGCACCGTTCGGGCCAGCTATATCGGCGCGCCGATGCA TCCCGCAGTCGCCATCACGACGATGGCCCCGGTGCCCGAGCAGGCGCTGCCGTCGGGCATCAGCCGTCGTCTCGACGGCA TTTACAAGCGGATCGAAGAATTCACGGTCGCATCGGCGCTGACGGCAGCGGTCGCCGTTCCGGGAAAGGGCCTGTGGCAG AAGACCCATGCGCCGGCGGATGCGCCGCGCCTGTTCTGGGCGAGTGCCGGGAAGACCTTTACGGCGGTCGTTGTCCTGCA ACTCGCCGAAGAGGGGAAACTGTCGCTCGATGACCCGGTTTCGCGATGGATCGCAGGTGTGCCGAGCGGCGAGATCGCGA CGCTCCGTGATCTGCTCGCCCACACCAGCGGCTTGTTCAGCGCCAATGAGGATGTCGGGGCCCACGCCGATCCCCGCTAT CGCGATCCGGCAACCAACCTTGAGATCGTGCGCCGTCACGGAGCTCTGTTCTGCCCCGGCGCAAACTGGCGCTATTCCAA CACGGGATACGATCTGCTCGGGGAAGTCGTCCGCAAGGCCGATCACCGTTCCATTGATGAGGCGATCACGGCGCGGATCA TCACGCCATTGGGGCTCTCCTCGCTGCGTGCGCTCGTGCCGGGCGGCGGATCGGAAGGCGTTGCGCCACTTGTGACGGCG CGCGAACAGGCCATCGATCCAAGCTGGGCTGGCGCTGCCGGTCCCGTCGTCGGCGATGCCGCCGATATGGCCCGCTTCTG GGCGGCCCTGCTCGGCGGACGACTGCTTCCGAAACGGACGGTGCGCGCGATGGCTCAAGCGCTATACCCCATGTACGAAA AGGGCACCTATTCCGGGCTCGGAATCATGGTGTTCGACGTGAACGACGGTGCCCGTTCGATTCGATGGATCGGGCACGCG GGCGGAACACCCGGCGCCAGCGCCATCGTCGCGTTCTCGCCCGCGGACAACGCGATCGTTGCCGTCGCCCTCACCGGCGA CAGCGCGACCGTGCCGGCGGCCAACATGCTTCTGAAGGCCCTTGCAGGACCAGAATGA
Upstream 100 bases:
>100_bases CTCTGCCCGCCGGGTCAACATGGGAAAAAAATTATCGTTTGCCAATAATTTTTTGTCGTGAGACAGATTTCCCGTCTTCA GGGAGTCGCCCCATGCCCCA
Downstream 100 bases:
>100_bases GGCGCCGCGAGGGTGCCCCGCCTGCCGGCTCGGACGGCCGGCCGCCTGCGGAAAGGGAAAGGGCCGGAGTGCCTGTCAGC ACTCCGGCCCTTTTATCAGA
Product: beta-lactamase
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase [H]
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MSCQTTHRLSRLCNRACHCRSRDGRANHLPWIDLGRSGGGDAGEGSNGSHRAAGSHRLSGRRWRSRKCGRDHGKCRLPEA VEPERGERWPSPQGYSLRSRCRNTCDAVDCQRYASSRRVPAPVSRPARRIADLDWQRNRAGAVIRQARLILALVGLMSLA GGSSAHSADFGPVQCTVRASYIGAPMHPAVAITTMAPVPEQALPSGISRRLDGIYKRIEEFTVASALTAAVAVPGKGLWQ KTHAPADAPRLFWASAGKTFTAVVVLQLAEEGKLSLDDPVSRWIAGVPSGEIATLRDLLAHTSGLFSANEDVGAHADPRY RDPATNLEIVRRHGALFCPGANWRYSNTGYDLLGEVVRKADHRSIDEAITARIITPLGLSSLRALVPGGGSEGVAPLVTA REQAIDPSWAGAAGPVVGDAADMARFWAALLGGRLLPKRTVRAMAQALYPMYEKGTYSGLGIMVFDVNDGARSIRWIGHA GGTPGASAIVAFSPADNAIVAVALTGDSATVPAANMLLKALAGPE
Sequences:
>Translated_525_residues MSCQTTHRLSRLCNRACHCRSRDGRANHLPWIDLGRSGGGDAGEGSNGSHRAAGSHRLSGRRWRSRKCGRDHGKCRLPEA VEPERGERWPSPQGYSLRSRCRNTCDAVDCQRYASSRRVPAPVSRPARRIADLDWQRNRAGAVIRQARLILALVGLMSLA GGSSAHSADFGPVQCTVRASYIGAPMHPAVAITTMAPVPEQALPSGISRRLDGIYKRIEEFTVASALTAAVAVPGKGLWQ KTHAPADAPRLFWASAGKTFTAVVVLQLAEEGKLSLDDPVSRWIAGVPSGEIATLRDLLAHTSGLFSANEDVGAHADPRY RDPATNLEIVRRHGALFCPGANWRYSNTGYDLLGEVVRKADHRSIDEAITARIITPLGLSSLRALVPGGGSEGVAPLVTA REQAIDPSWAGAAGPVVGDAADMARFWAALLGGRLLPKRTVRAMAQALYPMYEKGTYSGLGIMVFDVNDGARSIRWIGHA GGTPGASAIVAFSPADNAIVAVALTGDSATVPAANMLLKALAGPE >Mature_524_residues SCQTTHRLSRLCNRACHCRSRDGRANHLPWIDLGRSGGGDAGEGSNGSHRAAGSHRLSGRRWRSRKCGRDHGKCRLPEAV EPERGERWPSPQGYSLRSRCRNTCDAVDCQRYASSRRVPAPVSRPARRIADLDWQRNRAGAVIRQARLILALVGLMSLAG GSSAHSADFGPVQCTVRASYIGAPMHPAVAITTMAPVPEQALPSGISRRLDGIYKRIEEFTVASALTAAVAVPGKGLWQK THAPADAPRLFWASAGKTFTAVVVLQLAEEGKLSLDDPVSRWIAGVPSGEIATLRDLLAHTSGLFSANEDVGAHADPRYR DPATNLEIVRRHGALFCPGANWRYSNTGYDLLGEVVRKADHRSIDEAITARIITPLGLSSLRALVPGGGSEGVAPLVTAR EQAIDPSWAGAAGPVVGDAADMARFWAALLGGRLLPKRTVRAMAQALYPMYEKGTYSGLGIMVFDVNDGARSIRWIGHAG GTPGASAIVAFSPADNAIVAVALTGDSATVPAANMLLKALAGPE
Specific function: Catalyzes distinct carboxypeptidation and transpeptidation reactions during the last stages of wall peptidoglycan synthesis. Mistaking a beta-lactam antibiotic molecule for a normal substrate (i.e., a D-alanyl-D-alanine- terminated peptide), it becomes im
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S12 family [H]
Homologues:
Organism=Caenorhabditis elegans, GI115533026, Length=338, Percent_Identity=22.4852071005917, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 55805; Mature: 55674
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCQTTHRLSRLCNRACHCRSRDGRANHLPWIDLGRSGGGDAGEGSNGSHRAAGSHRLSG CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC RRWRSRKCGRDHGKCRLPEAVEPERGERWPSPQGYSLRSRCRNTCDAVDCQRYASSRRVP CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC APVSRPARRIADLDWQRNRAGAVIRQARLILALVGLMSLAGGSSAHSADFGPVQCTVRAS CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEH YIGAPMHPAVAITTMAPVPEQALPSGISRRLDGIYKRIEEFTVASALTAAVAVPGKGLWQ CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH KTHAPADAPRLFWASAGKTFTAVVVLQLAEEGKLSLDDPVSRWIAGVPSGEIATLRDLLA HCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH HTSGLFSANEDVGAHADPRYRDPATNLEIVRRHGALFCPGANWRYSNTGYDLLGEVVRKA HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHH DHRSIDEAITARIITPLGLSSLRALVPGGGSEGVAPLVTAREQAIDPSWAGAAGPVVGDA HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH ADMARFWAALLGGRLLPKRTVRAMAQALYPMYEKGTYSGLGIMVFDVNDGARSIRWIGHA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECC GGTPGASAIVAFSPADNAIVAVALTGDSATVPAANMLLKALAGPE CCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure SCQTTHRLSRLCNRACHCRSRDGRANHLPWIDLGRSGGGDAGEGSNGSHRAAGSHRLSG CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC RRWRSRKCGRDHGKCRLPEAVEPERGERWPSPQGYSLRSRCRNTCDAVDCQRYASSRRVP CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC APVSRPARRIADLDWQRNRAGAVIRQARLILALVGLMSLAGGSSAHSADFGPVQCTVRAS CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEH YIGAPMHPAVAITTMAPVPEQALPSGISRRLDGIYKRIEEFTVASALTAAVAVPGKGLWQ CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH KTHAPADAPRLFWASAGKTFTAVVVLQLAEEGKLSLDDPVSRWIAGVPSGEIATLRDLLA HCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH HTSGLFSANEDVGAHADPRYRDPATNLEIVRRHGALFCPGANWRYSNTGYDLLGEVVRKA HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHH DHRSIDEAITARIITPLGLSSLRALVPGGGSEGVAPLVTAREQAIDPSWAGAAGPVVGDA HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH ADMARFWAALLGGRLLPKRTVRAMAQALYPMYEKGTYSGLGIMVFDVNDGARSIRWIGHA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECC GGTPGASAIVAFSPADNAIVAVALTGDSATVPAANMLLKALAGPE CCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3830154; 7925404; 3030739; 2175384; 2386365; 3997832; 7490745 [H]