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The map label for this gene is cobD [H]

Identifier: 158423883

GI number: 158423883

Start: 2582394

End: 2583368

Strand: Reverse

Name: cobD [H]

Synonym: AZC_2259

Alternate gene names: 158423883

Gene position: 2583368-2582394 (Counterclockwise)

Preceding gene: 158423888

Following gene: 158423879

Centisome position: 48.11

GC content: 70.05

Gene sequence:

>975_bases
ATGGCTTTTGATCTGACCTGCGTCGCTTTGCTTGTGGAAGGCCTGACCGGCTATCCGCAGCCGCTGTTCCGCGCCATTCG
CCACCCCGTGGTCTGGGCCGGAACGCTCATCAGCGCACTCGAGTCGCGTCTCAACCGCACCACCCTCCCCGGCCCTGCCC
GCAAGCGGAACGGCGTCCTGACCGTCATCGTCCTGCTCGCCTGCGCCATGCTGCCGGCGCTGATGCTAGAGGCGTTCCTG
CGCCAGTTCGCGCTCGGCGTGGTGCTGGCGGGCATCCTCGGCAGCGTGCTCATCGCCCAGCACTCGCTTTATACGTACGT
TGCGGCCGTGGCGACGGCGCTGGAGAAAGGCGGCCTTGCCGCCGGGCGCCGCGCCGTCTCGCACATCGTCGGACGCGATC
CCGAGCAACTGGATGTCGCCGGCGTGACGCGCGGGGCCATCGAGAGCCTGGCCGAGAATTTCTCGGACGGCATCGTCGCG
CCCACATTCTGGATGCTGGTGGGCGGCCTCGCGGGCGGGGCCGGCTACAAGGCGCTGAATACGGCGGACAGCATGATCGG
CCACCGCAATCCTCGCTATGAGGATTTCGGCTGGGCGGCGGCGCGGCTGGATGATCTCGTGAACCTGCCCGCCTCGCGTC
TCTCCGGCCTGCTCATCGTGCTCGCGGCCGGACTGCTGCCGGGCTGTTCGCCCAAAGAGGCCTGGCGCGCCATGCTGCGC
GACGCTCCCCATCACCGCTCGCCCAATGCCGGTTGGCCGGAGGCGGCCATGGCGGGAGCTCTGGGCATCTCCATCGCCGG
CCCGCGTTCCTATGGCGGCGTGCCGGCGCAGGCGGCCTACATGGGCAACGGCCGCCGGGACATCGACGCCCGCGACATCC
GCGCGGCCCTGCGCCTCTATGTGGCGGCGGACGCGCTGCTGGTGGTGTTCGTCACGCTGATCGCGCTCGCGGGCCTCGTC
ATCGCGCGAGGCTGA

Upstream 100 bases:

>100_bases
AGACACTTCCCGTGACAGACATTACAGGACGTCCCGTTCCCGAGATTGCGTGCCGGACGTACCGCAGCGTCCCCACGCCC
TTGATGCCCGAAGACATGCC

Downstream 100 bases:

>100_bases
GGAGGCGGTCGAGGTCGAGATGCGCCGAGAGGTGAGCGGCAAGACCGTCCAGCGCCTCTTCGACGCCTGCCTCATAGGCC
ACCTGAGCCGGCCCTGCGCC

Product: cobalamin biosynthesis protein

Products: ADP; phosphate; Adenosyl cobinamide phosphate; Adenosyl cobinamide

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MAFDLTCVALLVEGLTGYPQPLFRAIRHPVVWAGTLISALESRLNRTTLPGPARKRNGVLTVIVLLACAMLPALMLEAFL
RQFALGVVLAGILGSVLIAQHSLYTYVAAVATALEKGGLAAGRRAVSHIVGRDPEQLDVAGVTRGAIESLAENFSDGIVA
PTFWMLVGGLAGGAGYKALNTADSMIGHRNPRYEDFGWAAARLDDLVNLPASRLSGLLIVLAAGLLPGCSPKEAWRAMLR
DAPHHRSPNAGWPEAAMAGALGISIAGPRSYGGVPAQAAYMGNGRRDIDARDIRAALRLYVAADALLVVFVTLIALAGLV
IARG

Sequences:

>Translated_324_residues
MAFDLTCVALLVEGLTGYPQPLFRAIRHPVVWAGTLISALESRLNRTTLPGPARKRNGVLTVIVLLACAMLPALMLEAFL
RQFALGVVLAGILGSVLIAQHSLYTYVAAVATALEKGGLAAGRRAVSHIVGRDPEQLDVAGVTRGAIESLAENFSDGIVA
PTFWMLVGGLAGGAGYKALNTADSMIGHRNPRYEDFGWAAARLDDLVNLPASRLSGLLIVLAAGLLPGCSPKEAWRAMLR
DAPHHRSPNAGWPEAAMAGALGISIAGPRSYGGVPAQAAYMGNGRRDIDARDIRAALRLYVAADALLVVFVTLIALAGLV
IARG
>Mature_323_residues
AFDLTCVALLVEGLTGYPQPLFRAIRHPVVWAGTLISALESRLNRTTLPGPARKRNGVLTVIVLLACAMLPALMLEAFLR
QFALGVVLAGILGSVLIAQHSLYTYVAAVATALEKGGLAAGRRAVSHIVGRDPEQLDVAGVTRGAIESLAENFSDGIVAP
TFWMLVGGLAGGAGYKALNTADSMIGHRNPRYEDFGWAAARLDDLVNLPASRLSGLLIVLAAGLLPGCSPKEAWRAMLRD
APHHRSPNAGWPEAAMAGALGISIAGPRSYGGVPAQAAYMGNGRRDIDARDIRAALRLYVAADALLVVFVTLIALAGLVI
ARG

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: 6.3.1.10

Molecular weight: Translated: 33955; Mature: 33824

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDLTCVALLVEGLTGYPQPLFRAIRHPVVWAGTLISALESRLNRTTLPGPARKRNGVL
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHH
TVIVLLACAMLPALMLEAFLRQFALGVVLAGILGSVLIAQHSLYTYVAAVATALEKGGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AGRRAVSHIVGRDPEQLDVAGVTRGAIESLAENFSDGIVAPTFWMLVGGLAGGAGYKALN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHH
TADSMIGHRNPRYEDFGWAAARLDDLVNLPASRLSGLLIVLAAGLLPGCSPKEAWRAMLR
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DAPHHRSPNAGWPEAAMAGALGISIAGPRSYGGVPAQAAYMGNGRRDIDARDIRAALRLY
CCCCCCCCCCCCCHHHHHHHHCCEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
VAADALLVVFVTLIALAGLVIARG
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFDLTCVALLVEGLTGYPQPLFRAIRHPVVWAGTLISALESRLNRTTLPGPARKRNGVL
CCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHH
TVIVLLACAMLPALMLEAFLRQFALGVVLAGILGSVLIAQHSLYTYVAAVATALEKGGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AGRRAVSHIVGRDPEQLDVAGVTRGAIESLAENFSDGIVAPTFWMLVGGLAGGAGYKALN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHH
TADSMIGHRNPRYEDFGWAAARLDDLVNLPASRLSGLLIVLAAGLLPGCSPKEAWRAMLR
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DAPHHRSPNAGWPEAAMAGALGISIAGPRSYGGVPAQAAYMGNGRRDIDARDIRAALRLY
CCCCCCCCCCCCCHHHHHHHHCCEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
VAADALLVVFVTLIALAGLVIARG
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; adenosylcobyric acid; (R)-1-aminopropan-2-yl phosphate; (R)-1-aminopropan-2-ol

Specific reaction: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate; (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2211520 [H]