| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is pgaC [H]
Identifier: 158423336
GI number: 158423336
Start: 1959043
End: 1961745
Strand: Reverse
Name: pgaC [H]
Synonym: AZC_1712
Alternate gene names: 158423336
Gene position: 1961745-1959043 (Counterclockwise)
Preceding gene: 158423337
Following gene: 158423335
Centisome position: 36.53
GC content: 67.18
Gene sequence:
>2703_bases ATGTCCCGCGCTTCCGCGCCAGGAACCTTGGTCGGAAGCGTGCGTTCTGAGGTTCGATCTCCCTTTCGAGTGGGTCTGGC CATGCGTCCCGGTCTCGCTGCTGCGGCGGCAGTCATTGCGGTTGTGACGGCGTTCCACGCCGCGATGTGGGTATCCTTGC GTCCCGAGGTAAACGCGCCTGCGGTTACCGATCGGTTCACGAGCCTGTCCTTCGCGCCTTATGGGCGCGGGGCGGACCCG GATGCCGGCGAGGCGACGAACGAGAAGCAGATCCGCGCCGACGTGGCGGCGGTCGCTCCTTACACACGGTCCATCCGTAC CTATTCCTCCACCGGCGGCGTCGAGCTGACGCCTCCGATCGCGGCCGAGCGCGGCCTCAAGGTCACGGTGGGCGCCTGGA TCGACAAGAACGAGGCGCGCAACGAGCGCGAGATCCGCAACGCGGTGGATCTTTCCCGCAAGAACCCGAACGTCGAAGGC CTCGTGGTCGGCAACGAGACCATCTTCCGCGGCGAGAAGAGCGCCGCCGAGATGGCCGAGCTGATCCGCAAGGTGAAGCG CCAGACCAACACGCCGGTCACCACCGGCGAGATCTGGAACGTGTGGCTGGATCATCCCGAGCTGGTCTCGGCGGTGGACT ATATCGCCGCGCACATCCTCCCCTACTGGGAGGGCGTCCCCGCCGAACAGGTGGTGGACCGCTCCATCGACATCTACAAC CGCCTGCGCGCCGCCTATCCCGGCAAGCGCATCGTCATCGCCGAGTTCGGCTGGCCGAGCGCGGGCTATAACCGCGACGC CTCGGTCCCCGGCGAGCTGGCGCAGGCGCAGGTCATCCGCACCTTCGCCGCCCGCGCCGAGGCTCTGGGCATCGAATACA ACATCATCGAGGCGTTCGACGCCCCGTGGAAGTCGTTCGAGGGCTCGGTCGGCCAGTATTGGGGCATCATGGACGCCCAG CGTCACCTGAAGTTCCCGCTCTCCGGCCCGATCACGGAATCGAACTACACCCACGCCGCCGTCCTCGCGCTGCTGCTGGG CATCCTGTTCTCGCTGCCGATGCTGCGCATGGCACCGCTGACCATGTCGCAGGGCCTCGCCCTTTCGGCCGCCGCCAATG GCGTCGGCGCCTGGGTGGCGCTCGTCATCAACTACTGGCTGACCCACTATGTGACGGGCGGCAACTACATCACCGTCACG CTGAGCTTCCTCCTGCTCGGCCCGCTGGTGGTGGTGGTGCTCTATCGCGCCGAGGAACTGGCCTCCGTCGCCTTCGGCCG CACCCCGCGCCGTCTGGTGGAGAACCAGCGCGCGTCGGTCCCGGTTCGCTTCCCCAAGGTCTCCATCCACGTGCCCGCCT ATCGCGAGCCGCCGGAGATGCTGAAGCAGACCATCGACAGCCTCGCCCGCCTCAACTACCCGAACTTCGAAGCGGTCATC ATCGTCAACAACACCCCCGACCCCGCCATGGTGGAGCCGGTCCGGGCGCACTGCGCGACGCTCGGTGACCACATCAAGTT CATCAATGCGGAGAAGGTCCAGGGCTTCAAGGCCGGCGCCCTGCGCATCGCCCTCGAGCACACGGCGGACGATGCCGAGA TCATCGGCGTCATCGACGCCGACTATGTGGTCCATCCCGACTGGCTGAAGAACCTCGTGCCCATGTTCGACGATCCCACC GTGGGTCTCGTCCAGGCGCCGCAGGACCATCGCGACGGCGCCGTGAGCCCGCTGCACGAGGCGATGAATGCCGAATATGC CGGCTTCTTCGACATCGGCATGGTCCAGCGCAACGAGGAAGACGCCATCGTGGTGCATGGCACCATGTGCCTGATCCGCC GCGCGGCGATGATGGAGGCCGGCTCCTGGTCGTCCGACACCATCTGCGAGGATACCGACCTCGGCCTTTCCATCGCCGAG AACGGCTGGAAGACGCACTACACCCGCGTGCGCTACGGCTGGGGCCTGCTGCCCGACACGTTCGAAGCCTTCAAGAAGCA GCGTCATCGCTGGGCCTATGGCGGCTTCCAGATCGTGAAGAAGCACTGGCGTCGGTTCCTGCCCGGCAACTCGCGCCTCA CCACCGCCCAGCGCCGGCACTTCCTGCTCGGCTGGGTGACCTGGCTCGGCGCCGAGTCGGTCGGTGCGCTCGCCGCGATC CTGTCGCTGCTGTTCGTGCCCTTCGTCTTCGCCCTCGGCATCGCCGTGCCGGCCCACGTGCTGACGCTACCGATCATCGC CACCTTCCTGGTCTATGTGCTGCACTTCATCGCCATGTACCGGATGCGCGTTGCCACCACGCCGCTGCGCATGCTGGGTG CCGCCTTCGCGGCCATGGCGGTGCAGTTCACGGTCGCCAAGGCGGTCTATGACGGCTTCCGCTACAAGGACCTCGCCTTC GCCCGCACGGCGAAGGGTGGCAACTGGCTGGCGGGCGCCGCCCGCTCCTTCCCGGCGCTCTGGGAAGCGGTGATCGGCGG CCTGCTCTTCACGGCCGGCGTGGCGGTGCACATGCAGAACTGGCATACCATCCGCGAAGTGGACCTCTATGCCCTCGCGC TGGTGATCCAGAGCCTGCCCTTCCTCGCCGCCGCGCTCATCGCGCTGGGCGAAGGCTCGAAGCTGAACGACTTCGCCGCC TGGAAGGCCTTCCGCGCCAAGCTCGGCCTGCGCACCCGCCTGCGGGCCCCCATCGCGGAGTGA
Upstream 100 bases:
>100_bases GGCCGCCACAGTCTACATTTACCACTTGATTTGAGACGGTTAGTGTCTCATTGCACTGCGCTAAGCGCGACAGTGCCGAC CGACGGGGCAGGTCGAATGG
Downstream 100 bases:
>100_bases GGCTCCGGCCTCTTTCCCACCGCTGATCCTGCGAACGCCCGGCCCTGTGCCGGGCGTTTTGCTATGGTGGGCCGATGACC GCTCTCCCGCTTCCCCCTCG
Product: glycosyltransferase
Products: NA
Alternate protein names: PGA synthase; Poly-beta-1,6-GlcNAc synthase; Biofilm PGA synthesis protein PgaC; N-acetylglucosaminyltransferase PgaC [H]
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MSRASAPGTLVGSVRSEVRSPFRVGLAMRPGLAAAAAVIAVVTAFHAAMWVSLRPEVNAPAVTDRFTSLSFAPYGRGADP DAGEATNEKQIRADVAAVAPYTRSIRTYSSTGGVELTPPIAAERGLKVTVGAWIDKNEARNEREIRNAVDLSRKNPNVEG LVVGNETIFRGEKSAAEMAELIRKVKRQTNTPVTTGEIWNVWLDHPELVSAVDYIAAHILPYWEGVPAEQVVDRSIDIYN RLRAAYPGKRIVIAEFGWPSAGYNRDASVPGELAQAQVIRTFAARAEALGIEYNIIEAFDAPWKSFEGSVGQYWGIMDAQ RHLKFPLSGPITESNYTHAAVLALLLGILFSLPMLRMAPLTMSQGLALSAAANGVGAWVALVINYWLTHYVTGGNYITVT LSFLLLGPLVVVVLYRAEELASVAFGRTPRRLVENQRASVPVRFPKVSIHVPAYREPPEMLKQTIDSLARLNYPNFEAVI IVNNTPDPAMVEPVRAHCATLGDHIKFINAEKVQGFKAGALRIALEHTADDAEIIGVIDADYVVHPDWLKNLVPMFDDPT VGLVQAPQDHRDGAVSPLHEAMNAEYAGFFDIGMVQRNEEDAIVVHGTMCLIRRAAMMEAGSWSSDTICEDTDLGLSIAE NGWKTHYTRVRYGWGLLPDTFEAFKKQRHRWAYGGFQIVKKHWRRFLPGNSRLTTAQRRHFLLGWVTWLGAESVGALAAI LSLLFVPFVFALGIAVPAHVLTLPIIATFLVYVLHFIAMYRMRVATTPLRMLGAAFAAMAVQFTVAKAVYDGFRYKDLAF ARTAKGGNWLAGAARSFPALWEAVIGGLLFTAGVAVHMQNWHTIREVDLYALALVIQSLPFLAAALIALGEGSKLNDFAA WKAFRAKLGLRTRLRAPIAE
Sequences:
>Translated_900_residues MSRASAPGTLVGSVRSEVRSPFRVGLAMRPGLAAAAAVIAVVTAFHAAMWVSLRPEVNAPAVTDRFTSLSFAPYGRGADP DAGEATNEKQIRADVAAVAPYTRSIRTYSSTGGVELTPPIAAERGLKVTVGAWIDKNEARNEREIRNAVDLSRKNPNVEG LVVGNETIFRGEKSAAEMAELIRKVKRQTNTPVTTGEIWNVWLDHPELVSAVDYIAAHILPYWEGVPAEQVVDRSIDIYN RLRAAYPGKRIVIAEFGWPSAGYNRDASVPGELAQAQVIRTFAARAEALGIEYNIIEAFDAPWKSFEGSVGQYWGIMDAQ RHLKFPLSGPITESNYTHAAVLALLLGILFSLPMLRMAPLTMSQGLALSAAANGVGAWVALVINYWLTHYVTGGNYITVT LSFLLLGPLVVVVLYRAEELASVAFGRTPRRLVENQRASVPVRFPKVSIHVPAYREPPEMLKQTIDSLARLNYPNFEAVI IVNNTPDPAMVEPVRAHCATLGDHIKFINAEKVQGFKAGALRIALEHTADDAEIIGVIDADYVVHPDWLKNLVPMFDDPT VGLVQAPQDHRDGAVSPLHEAMNAEYAGFFDIGMVQRNEEDAIVVHGTMCLIRRAAMMEAGSWSSDTICEDTDLGLSIAE NGWKTHYTRVRYGWGLLPDTFEAFKKQRHRWAYGGFQIVKKHWRRFLPGNSRLTTAQRRHFLLGWVTWLGAESVGALAAI LSLLFVPFVFALGIAVPAHVLTLPIIATFLVYVLHFIAMYRMRVATTPLRMLGAAFAAMAVQFTVAKAVYDGFRYKDLAF ARTAKGGNWLAGAARSFPALWEAVIGGLLFTAGVAVHMQNWHTIREVDLYALALVIQSLPFLAAALIALGEGSKLNDFAA WKAFRAKLGLRTRLRAPIAE >Mature_899_residues SRASAPGTLVGSVRSEVRSPFRVGLAMRPGLAAAAAVIAVVTAFHAAMWVSLRPEVNAPAVTDRFTSLSFAPYGRGADPD AGEATNEKQIRADVAAVAPYTRSIRTYSSTGGVELTPPIAAERGLKVTVGAWIDKNEARNEREIRNAVDLSRKNPNVEGL VVGNETIFRGEKSAAEMAELIRKVKRQTNTPVTTGEIWNVWLDHPELVSAVDYIAAHILPYWEGVPAEQVVDRSIDIYNR LRAAYPGKRIVIAEFGWPSAGYNRDASVPGELAQAQVIRTFAARAEALGIEYNIIEAFDAPWKSFEGSVGQYWGIMDAQR HLKFPLSGPITESNYTHAAVLALLLGILFSLPMLRMAPLTMSQGLALSAAANGVGAWVALVINYWLTHYVTGGNYITVTL SFLLLGPLVVVVLYRAEELASVAFGRTPRRLVENQRASVPVRFPKVSIHVPAYREPPEMLKQTIDSLARLNYPNFEAVII VNNTPDPAMVEPVRAHCATLGDHIKFINAEKVQGFKAGALRIALEHTADDAEIIGVIDADYVVHPDWLKNLVPMFDDPTV GLVQAPQDHRDGAVSPLHEAMNAEYAGFFDIGMVQRNEEDAIVVHGTMCLIRRAAMMEAGSWSSDTICEDTDLGLSIAEN GWKTHYTRVRYGWGLLPDTFEAFKKQRHRWAYGGFQIVKKHWRRFLPGNSRLTTAQRRHFLLGWVTWLGAESVGALAAIL SLLFVPFVFALGIAVPAHVLTLPIIATFLVYVLHFIAMYRMRVATTPLRMLGAAFAAMAVQFTVAKAVYDGFRYKDLAFA RTAKGGNWLAGAARSFPALWEAVIGGLLFTAGVAVHMQNWHTIREVDLYALALVIQSLPFLAAALIALGEGSKLNDFAAW KAFRAKLGLRTRLRAPIAE
Specific function: Probable N-acetylglucosaminyltransferase that catalyzes the polymerization of single monomer units of UDP-N- acetylglucosamine to produce the linear homopolymer poly-beta-1,6- N-acetyl-D-glucosamine (PGA), a biofilm adhesin polysaccharide [H]
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787259, Length=249, Percent_Identity=28.5140562248996, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI87082284, Length=244, Percent_Identity=25.8196721311475, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321721, Length=280, Percent_Identity=23.2142857142857, Blast_Score=81, Evalue=8e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 98751; Mature: 98620
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRASAPGTLVGSVRSEVRSPFRVGLAMRPGLAAAAAVIAVVTAFHAAMWVSLRPEVNAP CCCCCCCCHHHHHHHHHHCCCHHCCCEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCC AVTDRFTSLSFAPYGRGADPDAGEATNEKQIRADVAAVAPYTRSIRTYSSTGGVELTPPI CHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHEECCCCCEEECCCH AAERGLKVTVGAWIDKNEARNEREIRNAVDLSRKNPNVEGLVVGNETIFRGEKSAAEMAE HHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCHHHHHHH LIRKVKRQTNTPVTTGEIWNVWLDHPELVSAVDYIAAHILPYWEGVPAEQVVDRSIDIYN HHHHHHHHCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RLRAAYPGKRIVIAEFGWPSAGYNRDASVPGELAQAQVIRTFAARAEALGIEYNIIEAFD HHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHCC APWKSFEGSVGQYWGIMDAQRHLKFPLSGPITESNYTHAAVLALLLGILFSLPMLRMAPL CCHHHCCCCCHHHHCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC TMSQGLALSAAANGVGAWVALVINYWLTHYVTGGNYITVTLSFLLLGPLVVVVLYRAEEL HHHCCCEEEHHCCHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHH ASVAFGRTPRRLVENQRASVPVRFPKVSIHVPAYREPPEMLKQTIDSLARLNYPNFEAVI HHHHHCCCHHHHHCCCCCCCCEECCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEE IVNNTPDPAMVEPVRAHCATLGDHIKFINAEKVQGFKAGALRIALEHTADDAEIIGVIDA EECCCCCCHHHHHHHHHHHHHHHHHEEECHHHHCCCCCCEEEEEEECCCCCCEEEEEECC DYVVHPDWLKNLVPMFDDPTVGLVQAPQDHRDGAVSPLHEAMNAEYAGFFDIGMVQRNEE CCEECCHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCEEEECCEEECCC DAIVVHGTMCLIRRAAMMEAGSWSSDTICEDTDLGLSIAENGWKTHYTRVRYGWGLLPDT CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHEEEEEECCCCCHHH FEAFKKQRHRWAYGGFQIVKKHWRRFLPGNSRLTTAQRRHFLLGWVTWLGAESVGALAAI HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHH LSLLFVPFVFALGIAVPAHVLTLPIIATFLVYVLHFIAMYRMRVATTPLRMLGAAFAAMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VQFTVAKAVYDGFRYKDLAFARTAKGGNWLAGAARSFPALWEAVIGGLLFTAGVAVHMQN HHHHHHHHHHCCCCCCHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHEEECC WHTIREVDLYALALVIQSLPFLAAALIALGEGSKLNDFAAWKAFRAKLGLRTRLRAPIAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCCCCCC >Mature Secondary Structure SRASAPGTLVGSVRSEVRSPFRVGLAMRPGLAAAAAVIAVVTAFHAAMWVSLRPEVNAP CCCCCCCHHHHHHHHHHCCCHHCCCEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCC AVTDRFTSLSFAPYGRGADPDAGEATNEKQIRADVAAVAPYTRSIRTYSSTGGVELTPPI CHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHEECCCCCEEECCCH AAERGLKVTVGAWIDKNEARNEREIRNAVDLSRKNPNVEGLVVGNETIFRGEKSAAEMAE HHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCHHHHHHH LIRKVKRQTNTPVTTGEIWNVWLDHPELVSAVDYIAAHILPYWEGVPAEQVVDRSIDIYN HHHHHHHHCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RLRAAYPGKRIVIAEFGWPSAGYNRDASVPGELAQAQVIRTFAARAEALGIEYNIIEAFD HHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHCC APWKSFEGSVGQYWGIMDAQRHLKFPLSGPITESNYTHAAVLALLLGILFSLPMLRMAPL CCHHHCCCCCHHHHCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC TMSQGLALSAAANGVGAWVALVINYWLTHYVTGGNYITVTLSFLLLGPLVVVVLYRAEEL HHHCCCEEEHHCCHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHH ASVAFGRTPRRLVENQRASVPVRFPKVSIHVPAYREPPEMLKQTIDSLARLNYPNFEAVI HHHHHCCCHHHHHCCCCCCCCEECCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEE IVNNTPDPAMVEPVRAHCATLGDHIKFINAEKVQGFKAGALRIALEHTADDAEIIGVIDA EECCCCCCHHHHHHHHHHHHHHHHHEEECHHHHCCCCCCEEEEEEECCCCCCEEEEEECC DYVVHPDWLKNLVPMFDDPTVGLVQAPQDHRDGAVSPLHEAMNAEYAGFFDIGMVQRNEE CCEECCHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCEEEECCEEECCC DAIVVHGTMCLIRRAAMMEAGSWSSDTICEDTDLGLSIAENGWKTHYTRVRYGWGLLPDT CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHEEEEEECCCCCHHH FEAFKKQRHRWAYGGFQIVKKHWRRFLPGNSRLTTAQRRHFLLGWVTWLGAESVGALAAI HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHH LSLLFVPFVFALGIAVPAHVLTLPIIATFLVYVLHFIAMYRMRVATTPLRMLGAAFAAMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VQFTVAKAVYDGFRYKDLAFARTAKGGNWLAGAARSFPALWEAVIGGLLFTAGVAVHMQN HHHHHHHHHHCCCCCCHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHEEECC WHTIREVDLYALALVIQSLPFLAAALIALGEGSKLNDFAAWKAFRAKLGLRTRLRAPIAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]