| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is atoS [C]
Identifier: 158423290
GI number: 158423290
Start: 1905896
End: 1908454
Strand: Direct
Name: atoS [C]
Synonym: AZC_1666
Alternate gene names: 158423290
Gene position: 1905896-1908454 (Clockwise)
Preceding gene: 158423289
Following gene: 158423291
Centisome position: 35.49
GC content: 69.21
Gene sequence:
>2559_bases ATGGTAGGGTTTTCCAACAAGGATGACTGGATGACGGGCGGAGCGGGTACCCCGGATCACGGTCCGGCGGAACGGGCAAC CGCAGGCCAGACGCAGCAATTCACCAGACTGATCCTCGCTGGAGCAGCCTTTGCGGGCGCTTTCGCGGCGGTGCTGGTGC AAGGGTCCGGTTCGAGCTTCATCCTTCCCGTCCTGGCTGCGCTCGCCTGCGTCGGGCTCGTCTCCATCGCCAATGCCATC ATCCGCTTCGGGCTCGCGCGGCCGCAGACGGGCGATGAAATGTCGCGTCTTCTCGTTGCGGCGACCAGCGACGGCGTCGC CGTCGTGGAAGACGGCGAGCAGATTTCGAGCGCCAATACGCCCTATCTGCGCCTGACCCGCAGCCGCGAAGGCCAGGCGC CCCTTCCGGAGCGCTTCCTCCAGCGTATTCCCGGCGGGCAGGCGATGCTCGCGGAAATTCTGCACGCGGTCGCCGAAGGC ACCTCCTGCACGCGAATGTTCCCCTTCGATGCCGACCCCGACGGCCGCAAGCTGCGGGTGTCGGTGCATCCGCTCGGCGG TCGCCGCCGCGCCATGTGGGTGCTGTCGGTCACCGGTGCGGAGCGCAGCGACGCGACCGCCGTGGTTCAAGCAGCCACCG TGCCTGCTGGTCCTGCCGATGCTGCGGTGACGGAACATTCCGCCGCCGCCGGCCTGCTGGCGCTGTGGGAGCGGGCCCCG CTCGGCATGTTCGTGCTGACGAGCGAGGAAGCCTGGCTGGCGAACGGCGCTCTGGCGCGGCTGCTGGGCTACGACCTCGC CGAAGTCGGCGCCGGGCGTATGTCCTTCCGCGAGATCATCCCTCCGTCCTCCGCCGGTGCCATGCTGGCTGCCCTGACCA AGGGGCGCAGCGACCCGGACGGGCTCGACATCGACGTCCTGCGCCGCGATGGCTCCACCCTGCCGGTCCGCGCTTTCGTC GGTGGCCTGCCCATGGGTGAATGCGTGGTGGTTCTGGCGCCGCGCGCCCGTGCGGCCGCCGCAGCGCCGAGCCTTGCCGC ACCGGTGGCGCGAGGATCTGACGACGCCGCCTTCTTCTCCCGATCGCCGCTGGCCATGGCCACCATCGATGCCAGGGGGC GCCTCACCGAAGCCAACGGCAGCTTTGCCCGCCTGTTCTCCGACGGCCGCACGCTGACCGGTCTCAAGCTCGAACGGCTT GTGGTGGAGCGGGACCAGATGGCGGTCGAGCAACTGGTGCAGGACGCCCTGCGCGACGGCGCCTCGGGCGCGGCGCAGGC GGTGGACATCGCCATCGCCGCCGAGGGTGGCCGGTCCGCGCGGCTCTATGCGGCGGCGCTGGGCGGACCCGGCGGGGGGG CGGCCATCTATGCGGTGGACACCACGGCCCAGCGGGCGCTGGAGGTGCAGTTCGCCCAGTCGCAGAAGATGCAGGCCATC GGTCAGCTCGCCGGCGGGGTGGCGCACGACTTCAACAACGTTCTGACCGCCATCATCGGCTATTGCGACCTGCTGCTGGC GAGCCACCGGCCCAGCGATCCGTCCTTCCCGGACATCATGCAGATCAAGCAGAATGCCAACCGCGCCGCCGGTCTCGTGC GGCAGCTTCTGGCCTTCTCGCGCCGCCAGACCCTGCGACCGCAGGTGATCCAGCTCACCGACGTGATCTCGGACCTCTCC ATGCTGCTGCGCCGCCTCATCGGCGAGACCATCACGCTGGAGGTGGAGCACGGCCGCGACCTGTGGCCGGTGAAGGTGGA CGTGAACCAGTTCGAACAGGTGATCGTCAATCTGGCGGTCAATGCCCGCGATGCCATGCCCGGCGGCGGGGCGCTGACGC TGCGCACCCGCAATGTCACGGCGGCCGAGACGGCGGCGCTCGGCGACGGCACCGTGGCACCGGGCGACTATGTGCTGGTG GAGGTGGTGGACACCGGCACCGGCATTCCGCCGGAGATCATGGACAAGATCTTCGAGCCCTTCTTCTCCACCAAGGAGGT GGGCAAGGGCACGGGGCTCGGCCTCTCCACCGTCTATGGCATCGTCCAGCAGACGGGGGGCACGATTCTCGCCACCAGTA CGCCGGGCGCGGGGACGACCTTCCGGGTCTTCCTGCCACGCCACGCCGAAGAGGCGGCAGAGGTGGAAGCCCGTCCCGCC GAGCCTGACACGCGCACGGCGGATCTCACGGGGCAGGGGAGCGTGCTGCTCGTGGAGGACGAGGATGCGGTGCGGGCCTT CGCCAGCCGCGCCCTCTCGGCCCGCGGCTACAATGTGGTGGCGGCCTCAGGCGGCGCCGAGGCCCTGGCCGTGGTGGATG CCGCCGAGCATCGCTTCGATCTTGTCATCTCGGACGTGGTGATGCCGGAGATGGACGGGCCGACCCTGCTGCGGGAACTG CGTGCCCGCCATCCGGAGCTGAAGGTCATCTTCATCTCCGGCTATGCGGAGGAGGCCTTTGCCAAGAATCTCCCTGCCAG CGAGAAATTCGCTTTCCTGCCCAAGCCCTTCACTCTGAAGCAGCTGGTGGCGGCGGTGAAAGAGACCATCGCCTCCTGA
Upstream 100 bases:
>100_bases TAAGAAATTGTTGACGATCGCGCGCGGATTTCAACCAATGCCGCTACTTTGCGTTAATTTCCGGGAATCATAACCTTCGC CTTGGCCCGCTGGCGGCAAA
Downstream 100 bases:
>100_bases ATGGCCGGCCAGGCGCGCCCCCAAGCGGCCGGTCGGACCATGCGCTGGGCTCATACGGCCATGCGACTTACCGCCGAAAT GGGTATCACCAGTCGCCCGT
Product: sensor protein
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 852; Mature: 852
Protein sequence:
>852_residues MVGFSNKDDWMTGGAGTPDHGPAERATAGQTQQFTRLILAGAAFAGAFAAVLVQGSGSSFILPVLAALACVGLVSIANAI IRFGLARPQTGDEMSRLLVAATSDGVAVVEDGEQISSANTPYLRLTRSREGQAPLPERFLQRIPGGQAMLAEILHAVAEG TSCTRMFPFDADPDGRKLRVSVHPLGGRRRAMWVLSVTGAERSDATAVVQAATVPAGPADAAVTEHSAAAGLLALWERAP LGMFVLTSEEAWLANGALARLLGYDLAEVGAGRMSFREIIPPSSAGAMLAALTKGRSDPDGLDIDVLRRDGSTLPVRAFV GGLPMGECVVVLAPRARAAAAAPSLAAPVARGSDDAAFFSRSPLAMATIDARGRLTEANGSFARLFSDGRTLTGLKLERL VVERDQMAVEQLVQDALRDGASGAAQAVDIAIAAEGGRSARLYAAALGGPGGGAAIYAVDTTAQRALEVQFAQSQKMQAI GQLAGGVAHDFNNVLTAIIGYCDLLLASHRPSDPSFPDIMQIKQNANRAAGLVRQLLAFSRRQTLRPQVIQLTDVISDLS MLLRRLIGETITLEVEHGRDLWPVKVDVNQFEQVIVNLAVNARDAMPGGGALTLRTRNVTAAETAALGDGTVAPGDYVLV EVVDTGTGIPPEIMDKIFEPFFSTKEVGKGTGLGLSTVYGIVQQTGGTILATSTPGAGTTFRVFLPRHAEEAAEVEARPA EPDTRTADLTGQGSVLLVEDEDAVRAFASRALSARGYNVVAASGGAEALAVVDAAEHRFDLVISDVVMPEMDGPTLLREL RARHPELKVIFISGYAEEAFAKNLPASEKFAFLPKPFTLKQLVAAVKETIAS
Sequences:
>Translated_852_residues MVGFSNKDDWMTGGAGTPDHGPAERATAGQTQQFTRLILAGAAFAGAFAAVLVQGSGSSFILPVLAALACVGLVSIANAI IRFGLARPQTGDEMSRLLVAATSDGVAVVEDGEQISSANTPYLRLTRSREGQAPLPERFLQRIPGGQAMLAEILHAVAEG TSCTRMFPFDADPDGRKLRVSVHPLGGRRRAMWVLSVTGAERSDATAVVQAATVPAGPADAAVTEHSAAAGLLALWERAP LGMFVLTSEEAWLANGALARLLGYDLAEVGAGRMSFREIIPPSSAGAMLAALTKGRSDPDGLDIDVLRRDGSTLPVRAFV GGLPMGECVVVLAPRARAAAAAPSLAAPVARGSDDAAFFSRSPLAMATIDARGRLTEANGSFARLFSDGRTLTGLKLERL VVERDQMAVEQLVQDALRDGASGAAQAVDIAIAAEGGRSARLYAAALGGPGGGAAIYAVDTTAQRALEVQFAQSQKMQAI GQLAGGVAHDFNNVLTAIIGYCDLLLASHRPSDPSFPDIMQIKQNANRAAGLVRQLLAFSRRQTLRPQVIQLTDVISDLS MLLRRLIGETITLEVEHGRDLWPVKVDVNQFEQVIVNLAVNARDAMPGGGALTLRTRNVTAAETAALGDGTVAPGDYVLV EVVDTGTGIPPEIMDKIFEPFFSTKEVGKGTGLGLSTVYGIVQQTGGTILATSTPGAGTTFRVFLPRHAEEAAEVEARPA EPDTRTADLTGQGSVLLVEDEDAVRAFASRALSARGYNVVAASGGAEALAVVDAAEHRFDLVISDVVMPEMDGPTLLREL RARHPELKVIFISGYAEEAFAKNLPASEKFAFLPKPFTLKQLVAAVKETIAS >Mature_852_residues MVGFSNKDDWMTGGAGTPDHGPAERATAGQTQQFTRLILAGAAFAGAFAAVLVQGSGSSFILPVLAALACVGLVSIANAI IRFGLARPQTGDEMSRLLVAATSDGVAVVEDGEQISSANTPYLRLTRSREGQAPLPERFLQRIPGGQAMLAEILHAVAEG TSCTRMFPFDADPDGRKLRVSVHPLGGRRRAMWVLSVTGAERSDATAVVQAATVPAGPADAAVTEHSAAAGLLALWERAP LGMFVLTSEEAWLANGALARLLGYDLAEVGAGRMSFREIIPPSSAGAMLAALTKGRSDPDGLDIDVLRRDGSTLPVRAFV GGLPMGECVVVLAPRARAAAAAPSLAAPVARGSDDAAFFSRSPLAMATIDARGRLTEANGSFARLFSDGRTLTGLKLERL VVERDQMAVEQLVQDALRDGASGAAQAVDIAIAAEGGRSARLYAAALGGPGGGAAIYAVDTTAQRALEVQFAQSQKMQAI GQLAGGVAHDFNNVLTAIIGYCDLLLASHRPSDPSFPDIMQIKQNANRAAGLVRQLLAFSRRQTLRPQVIQLTDVISDLS MLLRRLIGETITLEVEHGRDLWPVKVDVNQFEQVIVNLAVNARDAMPGGGALTLRTRNVTAAETAALGDGTVAPGDYVLV EVVDTGTGIPPEIMDKIFEPFFSTKEVGKGTGLGLSTVYGIVQQTGGTILATSTPGAGTTFRVFLPRHAEEAAEVEARPA EPDTRTADLTGQGSVLLVEDEDAVRAFASRALSARGYNVVAASGGAEALAVVDAAEHRFDLVISDVVMPEMDGPTLLREL RARHPELKVIFISGYAEEAFAKNLPASEKFAFLPKPFTLKQLVAAVKETIAS
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=256, Percent_Identity=29.296875, Blast_Score=112, Evalue=1e-25, Organism=Escherichia coli, GI1790436, Length=246, Percent_Identity=31.7073170731707, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI1788713, Length=472, Percent_Identity=25.2118644067797, Blast_Score=99, Evalue=2e-21, Organism=Escherichia coli, GI1790300, Length=307, Percent_Identity=32.2475570032573, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI87081816, Length=261, Percent_Identity=30.6513409961686, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI48994928, Length=228, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1786912, Length=252, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1790299, Length=121, Percent_Identity=33.8842975206612, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1788550, Length=119, Percent_Identity=34.453781512605, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI145693157, Length=256, Percent_Identity=25.390625, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 89287; Mature: 89287
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGFSNKDDWMTGGAGTPDHGPAERATAGQTQQFTRLILAGAAFAGAFAAVLVQGSGSSF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCC ILPVLAALACVGLVSIANAIIRFGLARPQTGDEMSRLLVAATSDGVAVVEDGEQISSANT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCEEEEECCHHHCCCCC PYLRLTRSREGQAPLPERFLQRIPGGQAMLAEILHAVAEGTSCTRMFPFDADPDGRKLRV CEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEE SVHPLGGRRRAMWVLSVTGAERSDATAVVQAATVPAGPADAAVTEHSAAAGLLALWERAP EEECCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC LGMFVLTSEEAWLANGALARLLGYDLAEVGAGRMSFREIIPPSSAGAMLAALTKGRSDPD CCEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCC GLDIDVLRRDGSTLPVRAFVGGLPMGECVVVLAPRARAAAAAPSLAAPVARGSDDAAFFS CCEEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHCCCCCCCCHHHC RSPLAMATIDARGRLTEANGSFARLFSDGRTLTGLKLERLVVERDQMAVEQLVQDALRDG CCCCEEEEECCCCCEECCCCCEEEHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCC ASGAAQAVDIAIAAEGGRSARLYAAALGGPGGGAAIYAVDTTAQRALEVQFAQSQKMQAI CCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH GQLAGGVAHDFNNVLTAIIGYCDLLLASHRPSDPSFPDIMQIKQNANRAAGLVRQLLAFS HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH RRQTLRPQVIQLTDVISDLSMLLRRLIGETITLEVEHGRDLWPVKVDVNQFEQVIVNLAV HHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHH NARDAMPGGGALTLRTRNVTAAETAALGDGTVAPGDYVLVEVVDTGTGIPPEIMDKIFEP CCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH FFSTKEVGKGTGLGLSTVYGIVQQTGGTILATSTPGAGTTFRVFLPRHAEEAAEVEARPA HHCHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCHHHHHCCCCCC EPDTRTADLTGQGSVLLVEDEDAVRAFASRALSARGYNVVAASGGAEALAVVDAAEHRFD CCCCCEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH LVISDVVMPEMDGPTLLRELRARHPELKVIFISGYAEEAFAKNLPASEKFAFLPKPFTLK EEEHHHHCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCCCEEECCCCCCHH QLVAAVKETIAS HHHHHHHHHHCC >Mature Secondary Structure MVGFSNKDDWMTGGAGTPDHGPAERATAGQTQQFTRLILAGAAFAGAFAAVLVQGSGSSF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCC ILPVLAALACVGLVSIANAIIRFGLARPQTGDEMSRLLVAATSDGVAVVEDGEQISSANT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCEEEEECCHHHCCCCC PYLRLTRSREGQAPLPERFLQRIPGGQAMLAEILHAVAEGTSCTRMFPFDADPDGRKLRV CEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEE SVHPLGGRRRAMWVLSVTGAERSDATAVVQAATVPAGPADAAVTEHSAAAGLLALWERAP EEECCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC LGMFVLTSEEAWLANGALARLLGYDLAEVGAGRMSFREIIPPSSAGAMLAALTKGRSDPD CCEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCC GLDIDVLRRDGSTLPVRAFVGGLPMGECVVVLAPRARAAAAAPSLAAPVARGSDDAAFFS CCEEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHCCCCCCCCHHHC RSPLAMATIDARGRLTEANGSFARLFSDGRTLTGLKLERLVVERDQMAVEQLVQDALRDG CCCCEEEEECCCCCEECCCCCEEEHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCC ASGAAQAVDIAIAAEGGRSARLYAAALGGPGGGAAIYAVDTTAQRALEVQFAQSQKMQAI CCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH GQLAGGVAHDFNNVLTAIIGYCDLLLASHRPSDPSFPDIMQIKQNANRAAGLVRQLLAFS HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH RRQTLRPQVIQLTDVISDLSMLLRRLIGETITLEVEHGRDLWPVKVDVNQFEQVIVNLAV HHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHH NARDAMPGGGALTLRTRNVTAAETAALGDGTVAPGDYVLVEVVDTGTGIPPEIMDKIFEP CCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH FFSTKEVGKGTGLGLSTVYGIVQQTGGTILATSTPGAGTTFRVFLPRHAEEAAEVEARPA HHCHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCHHHHHCCCCCC EPDTRTADLTGQGSVLLVEDEDAVRAFASRALSARGYNVVAASGGAEALAVVDAAEHRFD CCCCCEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH LVISDVVMPEMDGPTLLRELRARHPELKVIFISGYAEEAFAKNLPASEKFAFLPKPFTLK EEEHHHHCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCCCEEECCCCCCHH QLVAAVKETIAS HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA