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The map label for this gene is ddpC [H]

Identifier: 158423137

GI number: 158423137

Start: 1721685

End: 1722578

Strand: Direct

Name: ddpC [H]

Synonym: AZC_1513

Alternate gene names: 158423137

Gene position: 1721685-1722578 (Clockwise)

Preceding gene: 158423136

Following gene: 158423138

Centisome position: 32.06

GC content: 66.55

Gene sequence:

>894_bases
ATGACCGCCATCTCCTCCGAACCCGCCCGCCGCCGCGCCTCCGGCGGTCTCACGGCGACACTGAAGCACGCCCAGTATGT
GATCTCGGACAATCCGGTCACGGGCCTCGCCTTCTTCATGCTGCTGGTGCTTGTTGTGGCGGCGCTGATTGGCCCCTTCA
TCGTGCCCTATGATCCGCTGGCCTCGGACACGGTGAATGCGCTGAAGCCGCCGACCGCCGCCCACTGGTTCGGCACCGAC
CAGCTCGGCCGGGACATCTTCTCCCGTGTCATCGTGGCGACGCGGCTCGATCTTGCCATCGCGGTCTTCTCGGTGGCGCT
GGTGTTCGCGGCGGGCGGCATCGCCGGTATCGCGGCGGGCTTCTTCGGCGGCTGGACGGACCGGATCGTCGGGCGCATCT
GCGACACCATCATGGCCTTCCCGCTGTTCGTGCTGGCTATGGGCATCGTGGCGGCGCTGGGCAATACGGTGACGAACATC
GTCATTGCCACCGCCATCATCAATTTCCCGCTCTATGCCCGCGTGGCGCGCTCTGAGGCGGCGATCCGGCGGCAGGCGGG
CTTCATCCAGGCGGCCCGCCTCACCGGCAATTCCGAATGGCGCATCCTGCTCACGCAGATCCTGCCCAACATCCTGCCCA
TCATGATGGTGCAGATGTCGCTCACCATGGGCTACGCCATCCTCAACGCGGCGGGGCTCTCCTTCATCGGCCTCGGCGTG
CGCCCGCCCACCGCCGAGTGGGGCATCATGGTGGCCGAGGGCGCGACCTTCATCGTCTCCGGCGAATGGTGGATCGCGCT
GTTTCCGGGCCTCGCGCTCATGTTCGCCGTCTTCTGCTTCAACCTGCTGGGCGATGGTCTGCGTGACATCGTCGATCCCC
AGCGTCGCACGTGA

Upstream 100 bases:

>100_bases
TGCAGGGCTTCGTGCTCGCCATGGCGATCCTCTACGTCGTCCTCAACCTCGTGATCGACCTTGCCTACGGCATCATCGAT
CCGCGCGCCCGGAGCGAAGC

Downstream 100 bases:

>100_bases
GGACCGGACCCATGCACGGCGTCATCGATCCCGCCACCCTGAAGCAGGCCCCCGCCGAAGAGGCGCGCGGCCCCCTGCTG
GAGGTCCGCGACCTCACCGT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTAISSEPARRRASGGLTATLKHAQYVISDNPVTGLAFFMLLVLVVAALIGPFIVPYDPLASDTVNALKPPTAAHWFGTD
QLGRDIFSRVIVATRLDLAIAVFSVALVFAAGGIAGIAAGFFGGWTDRIVGRICDTIMAFPLFVLAMGIVAALGNTVTNI
VIATAIINFPLYARVARSEAAIRRQAGFIQAARLTGNSEWRILLTQILPNILPIMMVQMSLTMGYAILNAAGLSFIGLGV
RPPTAEWGIMVAEGATFIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT

Sequences:

>Translated_297_residues
MTAISSEPARRRASGGLTATLKHAQYVISDNPVTGLAFFMLLVLVVAALIGPFIVPYDPLASDTVNALKPPTAAHWFGTD
QLGRDIFSRVIVATRLDLAIAVFSVALVFAAGGIAGIAAGFFGGWTDRIVGRICDTIMAFPLFVLAMGIVAALGNTVTNI
VIATAIINFPLYARVARSEAAIRRQAGFIQAARLTGNSEWRILLTQILPNILPIMMVQMSLTMGYAILNAAGLSFIGLGV
RPPTAEWGIMVAEGATFIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT
>Mature_296_residues
TAISSEPARRRASGGLTATLKHAQYVISDNPVTGLAFFMLLVLVVAALIGPFIVPYDPLASDTVNALKPPTAAHWFGTDQ
LGRDIFSRVIVATRLDLAIAVFSVALVFAAGGIAGIAAGFFGGWTDRIVGRICDTIMAFPLFVLAMGIVAALGNTVTNIV
IATAIINFPLYARVARSEAAIRRQAGFIQAARLTGNSEWRILLTQILPNILPIMMVQMSLTMGYAILNAAGLSFIGLGVR
PPTAEWGIMVAEGATFIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=269, Percent_Identity=40.8921933085502, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1787054, Length=260, Percent_Identity=43.8461538461538, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=41.49377593361, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789964, Length=256, Percent_Identity=37.5, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787498, Length=261, Percent_Identity=31.0344827586207, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787549, Length=255, Percent_Identity=31.3725490196078, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=22.9074889867841, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31711; Mature: 31580

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAISSEPARRRASGGLTATLKHAQYVISDNPVTGLAFFMLLVLVVAALIGPFIVPYDPL
CCCCCCCHHHHHHCCCCEEEHHHHEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ASDTVNALKPPTAAHWFGTDQLGRDIFSRVIVATRLDLAIAVFSVALVFAAGGIAGIAAG
CHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
FFGGWTDRIVGRICDTIMAFPLFVLAMGIVAALGNTVTNIVIATAIINFPLYARVARSEA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIRRQAGFIQAARLTGNSEWRILLTQILPNILPIMMVQMSLTMGYAILNAAGLSFIGLGV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCC
RPPTAEWGIMVAEGATFIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT
CCCCCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAISSEPARRRASGGLTATLKHAQYVISDNPVTGLAFFMLLVLVVAALIGPFIVPYDPL
CCCCCCHHHHHHCCCCEEEHHHHEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ASDTVNALKPPTAAHWFGTDQLGRDIFSRVIVATRLDLAIAVFSVALVFAAGGIAGIAAG
CHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
FFGGWTDRIVGRICDTIMAFPLFVLAMGIVAALGNTVTNIVIATAIINFPLYARVARSEA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIRRQAGFIQAARLTGNSEWRILLTQILPNILPIMMVQMSLTMGYAILNAAGLSFIGLGV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCC
RPPTAEWGIMVAEGATFIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT
CCCCCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]