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The map label for this gene is dppB [H]

Identifier: 158423136

GI number: 158423136

Start: 1720675

End: 1721688

Strand: Direct

Name: dppB [H]

Synonym: AZC_1512

Alternate gene names: 158423136

Gene position: 1720675-1721688 (Clockwise)

Preceding gene: 158423135

Following gene: 158423137

Centisome position: 32.04

GC content: 66.86

Gene sequence:

>1014_bases
GTGCTGAAGCTTATTGGCAGCCGTCTCGCCACTGCGATTCCGAGCCTCATCGGCGTCGTCATCGTCACCTTCCTGCTCAC
CCGCGTGCTGCCGGGCGACACGGCCGCTTATTTCGCAGGCCCCGCGGCGACGCCGCAGGCAATTGCCGAAATCCGCACCA
AGCTCGGCCTCGACAAGCCGCTGCCGGTGCAGTTCGTGGACTATGTGTCCGCGCTGGCGAAGGGCGATCTCGGCGCCTCG
CTCTCCACCGGCCAGCCGGTGTCGAAGGAGATCGCCACCCGCCTGCCGGCCTCCGCCGAACTCACACTCTCCGGCCTCAT
CCTCGCGCTCGTCATCGCCGTGCCGTTCGGCATCGCCGCCGCCGTGAAGCAGGGGTCTTGGATCGACCACGCCTGCCGGC
TCATCACCACGGCGGGCGTCTCGCTGCCGGTCTTCTTCACCGGCCTGCTGCTGGTCTATCTCTTCTATTTCCGCCTCGGC
TGGGCACCGGCGCCGCTCGGGCGGCTCGATGTCTTCTATTCCGCGCCAGACACGGTGACGGGCTTCTATCTCATCGACAG
CCTGATCGCCCGCGACGGCGACACCTTCCGCGCCGCGCTGGCCCAACTCGTGGTGCCGGCCCTGACGCTCGCCATCTTCG
CGCTCGCGCCCATCGCCCGCATCACGCGCGCCTCCATGCTTCAGGTGCTTTCCTCGGAATTCATCCGCACCGCGCGGGCG
GCGGGCCTCACCTCCAAGACGGTGATCGTCACCTATGCCTTCCGCAATGCCATGCTGCCTGTGGTGACGACGCTGGGCAT
GGTCTTCTCCTTCCTGCTCGGGGCCAATGTGCTGGTGGAGAAGGTGTTCGCCTGGCCGGGCATCGGCTCCTATGCGGTGG
AGGCGCTCATCTCCTCCGATTTCGCCCCGGTGCAGGGCTTCGTGCTCGCCATGGCGATCCTCTACGTCGTCCTCAACCTC
GTGATCGACCTTGCCTACGGCATCATCGATCCGCGCGCCCGGAGCGAAGCATGA

Upstream 100 bases:

>100_bases
CATCTTGCTCCTGCGGGGGAGCGGGCCGGGAGGCGGGCGCGGCGGCCTGTCTTCCGGTTCCCCCGCCGACCGCCCCATGG
ACAACCATCAGGAGGGTGCC

Downstream 100 bases:

>100_bases
CCGCCATCTCCTCCGAACCCGCCCGCCGCCGCGCCTCCGGCGGTCTCACGGCGACACTGAAGCACGCCCAGTATGTGATC
TCGGACAATCCGGTCACGGG

Product: ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLKLIGSRLATAIPSLIGVVIVTFLLTRVLPGDTAAYFAGPAATPQAIAEIRTKLGLDKPLPVQFVDYVSALAKGDLGAS
LSTGQPVSKEIATRLPASAELTLSGLILALVIAVPFGIAAAVKQGSWIDHACRLITTAGVSLPVFFTGLLLVYLFYFRLG
WAPAPLGRLDVFYSAPDTVTGFYLIDSLIARDGDTFRAALAQLVVPALTLAIFALAPIARITRASMLQVLSSEFIRTARA
AGLTSKTVIVTYAFRNAMLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSDFAPVQGFVLAMAILYVVLNL
VIDLAYGIIDPRARSEA

Sequences:

>Translated_337_residues
MLKLIGSRLATAIPSLIGVVIVTFLLTRVLPGDTAAYFAGPAATPQAIAEIRTKLGLDKPLPVQFVDYVSALAKGDLGAS
LSTGQPVSKEIATRLPASAELTLSGLILALVIAVPFGIAAAVKQGSWIDHACRLITTAGVSLPVFFTGLLLVYLFYFRLG
WAPAPLGRLDVFYSAPDTVTGFYLIDSLIARDGDTFRAALAQLVVPALTLAIFALAPIARITRASMLQVLSSEFIRTARA
AGLTSKTVIVTYAFRNAMLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSDFAPVQGFVLAMAILYVVLNL
VIDLAYGIIDPRARSEA
>Mature_337_residues
MLKLIGSRLATAIPSLIGVVIVTFLLTRVLPGDTAAYFAGPAATPQAIAEIRTKLGLDKPLPVQFVDYVSALAKGDLGAS
LSTGQPVSKEIATRLPASAELTLSGLILALVIAVPFGIAAAVKQGSWIDHACRLITTAGVSLPVFFTGLLLVYLFYFRLG
WAPAPLGRLDVFYSAPDTVTGFYLIDSLIARDGDTFRAALAQLVVPALTLAIFALAPIARITRASMLQVLSSEFIRTARA
AGLTSKTVIVTYAFRNAMLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSDFAPVQGFVLAMAILYVVLNL
VIDLAYGIIDPRARSEA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=40, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=45.3968253968254, Blast_Score=241, Evalue=4e-65,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=36.9047619047619, Blast_Score=224, Evalue=5e-60,
Organism=Escherichia coli, GI1789888, Length=339, Percent_Identity=33.9233038348083, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787497, Length=336, Percent_Identity=31.25, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=29.3478260869565, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1788504, Length=312, Percent_Identity=27.2435897435897, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35633; Mature: 35633

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLIGSRLATAIPSLIGVVIVTFLLTRVLPGDTAAYFAGPAATPQAIAEIRTKLGLDKP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCC
LPVQFVDYVSALAKGDLGASLSTGQPVSKEIATRLPASAELTLSGLILALVIAVPFGIAA
CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AVKQGSWIDHACRLITTAGVSLPVFFTGLLLVYLFYFRLGWAPAPLGRLDVFYSAPDTVT
HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCHHH
GFYLIDSLIARDGDTFRAALAQLVVPALTLAIFALAPIARITRASMLQVLSSEFIRTARA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLTSKTVIVTYAFRNAMLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSD
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
FAPVQGFVLAMAILYVVLNLVIDLAYGIIDPRARSEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLKLIGSRLATAIPSLIGVVIVTFLLTRVLPGDTAAYFAGPAATPQAIAEIRTKLGLDKP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCC
LPVQFVDYVSALAKGDLGASLSTGQPVSKEIATRLPASAELTLSGLILALVIAVPFGIAA
CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AVKQGSWIDHACRLITTAGVSLPVFFTGLLLVYLFYFRLGWAPAPLGRLDVFYSAPDTVT
HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCHHH
GFYLIDSLIARDGDTFRAALAQLVVPALTLAIFALAPIARITRASMLQVLSSEFIRTARA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLTSKTVIVTYAFRNAMLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSD
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
FAPVQGFVLAMAILYVVLNLVIDLAYGIIDPRARSEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]