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The map label for this gene is araC [H]

Identifier: 158423121

GI number: 158423121

Start: 1699098

End: 1700102

Strand: Direct

Name: araC [H]

Synonym: AZC_1497

Alternate gene names: 158423121

Gene position: 1699098-1700102 (Clockwise)

Preceding gene: 158423115

Following gene: 158423122

Centisome position: 31.64

GC content: 69.25

Gene sequence:

>1005_bases
ATGCCCAAAAGCGACGCTTTGTTGACGAAAAGCGACGTCGCGCACGAAAGGACGATCGTGACACCCAGCGGCTCGCGCAC
CTTCGGCTTCCTGCTGCTGCCGGATTTCGCGCTCCTCACCTATGCCAGCGCCATCGAGCCCTTGCGGGCGGCCAACGCCC
TTTCGGGGCAGGATCTCTATCGCTGGCGGCACATTTCGGTGGATGGGCAGCCGGTGAAGGCCTCCAACGGCGTCGCCATC
GCGGTCGATGAGCGGGTGGGGGAGACTCTCGCGCTCGACGCTCTGGTGGCGGTGGCGGGCGGCAATCCGGCGCGCTTCCG
CCACAAGGCCACCTTCACCTTCCTGCGCCGGCTCGCCCACCGGGGCGTCATGCTGGCGGGCATCTCGGGTGGGCCTTATG
CGCTCGCCCGCGCCGGCGTGCTGGCGGGCCACCGCTGCACACTCCACTGGGAGCACATCCCGGCCTTCACGGAGGAGTTT
CCGGACTTGGACGTGAAGCGCACGCTCTATGAGATCGACCGCGACCGCGTGACCTGCGCGGGCGGCATCGCCACGCTCGA
CATGATGGCGGATCTCATCGCCCGCGATCACGGGCCGGGGCTCGCCAACGCGGTGTCCGAATGGTTCCTGCGCACGCAGG
CCCGCCCCGCCTCCGGCGCGCAGCGCATGGCGCCCCGCGAACGTTTCGGCATCGGCAATGCCAAGGTGCTGAGCGTTCTG
GCGGAAATGGAGGCGCGGCTGGAGGAGCCGGCCACGCGGCAGGAACTGGCGGCGCTGGCGGGCATCTCCCTCCGCCAGCT
GGAGCGGCTGTTCGCCGACCATCTGGGCGAGACGCTGGGTGCCCATTATCTGCGCGTGCGGCTCGATCGCGCCCGCTCCC
TGCTGAAGCAGACGGCCTTGCCGGTGGCCGAGGTGGCCATGGCGTGCGGCTTTGTCTCCACCAGCCATTTTTCGCGCGCC
TACAAGGCCCGCTTCGGCGCCTCGCCCAAGGGCGAGCGGGTATAA

Upstream 100 bases:

>100_bases
GCCAAGAGGCTGAAGACGGAATAGCGCATCGTCGTTCCTGAGAAGGGCCCCGCATCGGGGCGCGGCTGGACTATGGATCG
CCCATCCCGCCTCTGGCATC

Downstream 100 bases:

>100_bases
AAAGTCTTTATTTCTCAATTGGTTCGATTTTGTAAGGCAAATCCAATTCCGGAAAATTGTTAATTAATTTCATTAATACG
TTATATATATAATTTTTCAT

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MPKSDALLTKSDVAHERTIVTPSGSRTFGFLLLPDFALLTYASAIEPLRAANALSGQDLYRWRHISVDGQPVKASNGVAI
AVDERVGETLALDALVAVAGGNPARFRHKATFTFLRRLAHRGVMLAGISGGPYALARAGVLAGHRCTLHWEHIPAFTEEF
PDLDVKRTLYEIDRDRVTCAGGIATLDMMADLIARDHGPGLANAVSEWFLRTQARPASGAQRMAPRERFGIGNAKVLSVL
AEMEARLEEPATRQELAALAGISLRQLERLFADHLGETLGAHYLRVRLDRARSLLKQTALPVAEVAMACGFVSTSHFSRA
YKARFGASPKGERV

Sequences:

>Translated_334_residues
MPKSDALLTKSDVAHERTIVTPSGSRTFGFLLLPDFALLTYASAIEPLRAANALSGQDLYRWRHISVDGQPVKASNGVAI
AVDERVGETLALDALVAVAGGNPARFRHKATFTFLRRLAHRGVMLAGISGGPYALARAGVLAGHRCTLHWEHIPAFTEEF
PDLDVKRTLYEIDRDRVTCAGGIATLDMMADLIARDHGPGLANAVSEWFLRTQARPASGAQRMAPRERFGIGNAKVLSVL
AEMEARLEEPATRQELAALAGISLRQLERLFADHLGETLGAHYLRVRLDRARSLLKQTALPVAEVAMACGFVSTSHFSRA
YKARFGASPKGERV
>Mature_333_residues
PKSDALLTKSDVAHERTIVTPSGSRTFGFLLLPDFALLTYASAIEPLRAANALSGQDLYRWRHISVDGQPVKASNGVAIA
VDERVGETLALDALVAVAGGNPARFRHKATFTFLRRLAHRGVMLAGISGGPYALARAGVLAGHRCTLHWEHIPAFTEEFP
DLDVKRTLYEIDRDRVTCAGGIATLDMMADLIARDHGPGLANAVSEWFLRTQARPASGAQRMAPRERFGIGNAKVLSVLA
EMEARLEEPATRQELAALAGISLRQLERLFADHLGETLGAHYLRVRLDRARSLLKQTALPVAEVAMACGFVSTSHFSRAY
KARFGASPKGERV

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510985, Length=95, Percent_Identity=37.8947368421053, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36285; Mature: 36154

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSDALLTKSDVAHERTIVTPSGSRTFGFLLLPDFALLTYASAIEPLRAANALSGQDLY
CCCCCCCEEHHHCCCCCEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RWRHISVDGQPVKASNGVAIAVDERVGETLALDALVAVAGGNPARFRHKATFTFLRRLAH
HEEEECCCCCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RGVMLAGISGGPYALARAGVLAGHRCTLHWEHIPAFTEEFPDLDVKRTLYEIDRDRVTCA
CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHCCHHHHHCCCCHHHHHHHHHCCCCEEEC
GGIATLDMMADLIARDHGPGLANAVSEWFLRTQARPASGAQRMAPRERFGIGNAKVLSVL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCHHHHCCCHHHHHHHH
AEMEARLEEPATRQELAALAGISLRQLERLFADHLGETLGAHYLRVRLDRARSLLKQTAL
HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVAEVAMACGFVSTSHFSRAYKARFGASPKGERV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PKSDALLTKSDVAHERTIVTPSGSRTFGFLLLPDFALLTYASAIEPLRAANALSGQDLY
CCCCCCEEHHHCCCCCEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RWRHISVDGQPVKASNGVAIAVDERVGETLALDALVAVAGGNPARFRHKATFTFLRRLAH
HEEEECCCCCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RGVMLAGISGGPYALARAGVLAGHRCTLHWEHIPAFTEEFPDLDVKRTLYEIDRDRVTCA
CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHCCHHHHHCCCCHHHHHHHHHCCCCEEEC
GGIATLDMMADLIARDHGPGLANAVSEWFLRTQARPASGAQRMAPRERFGIGNAKVLSVL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCHHHHCCCHHHHHHHH
AEMEARLEEPATRQELAALAGISLRQLERLFADHLGETLGAHYLRVRLDRARSLLKQTAL
HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVAEVAMACGFVSTSHFSRAYKARFGASPKGERV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]