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The map label for this gene is rbsC [H]

Identifier: 158423041

GI number: 158423041

Start: 1613000

End: 1613917

Strand: Direct

Name: rbsC [H]

Synonym: AZC_1417

Alternate gene names: 158423041

Gene position: 1613000-1613917 (Clockwise)

Preceding gene: 158423040

Following gene: 158423042

Centisome position: 30.04

GC content: 68.95

Gene sequence:

>918_bases
TTGCCGGCGGTGCCCGGGGTTGCCGTCGCCCTCGTCGGCCTCGCGGTCCTGTTCGCCATCGCGAGCCCCGGCTTCCTGTC
GCCGGGCAATCTGTCGAACATCCTCGTCCAGTCGGTGATCCTGCTGCTCCTCGCTCTGCCGATGACGCTGATCATCATGA
CCGAGGGGCTCGACCTCTCCATGGGCGCAGTGCTCACGCTCGCCTCGCTGGTGCTGGCGCTCATCGTCGTGGCGACCCAG
TCGCTGGTCCTCGGGTTGCTCGGGGCCATCGCGGTCGGCCTCGTCTTCGGCCTTGCCAATGGCTGGCTGGTGGCGGTCCT
TGGCATCCCGCCCTTCGTCGCCACCCTCGGCACGCTCGGGGCTGCCCAGGGGCTGGCGCTCATCGTGTCCGATGGCCAGA
GCGTGGTCGGCATCCCGCGCTTCGTGCGGCAGGTCTATTCCGGCGAGATGGCGGGCATTCCGACGCCGATCCTCATCGGC
GCGGGCTTCTATGCCCTCTTCCATGTGCTGCTCTATCACACGCGCTTCGGCACCTATGTCTGCGCGCTGGGCGGCAACCG
GGATGCGCTGACGCTCGCCGGCGTGCGCTGGCGGCCTCTCCTCATCGCCGTCTACATGCTGGGCGGCGCCACCGCCGGCG
TCGCGGCCCTGCTGATGACGGCCCGCATGAATGCCGGCCATCCCACCGCCGCCATCGGCATGGAGTTCGACGCCATCGCC
GCCGTGGCGCTGGGCGGGACCTCTTTCGAGAAGGGCAACGGCTGGATCTTCGGCACCCTGCTCGGCGTGCTCACCGTCGG
TGTGCTGCGCAACGGCCTGAACCTCATGGCCGTGCCGTCTTCGGTGCAGGTGGCCTGCATCGGCGCCCTCGTCATCTTCG
CCCTCTTCCTCGACGGCATGCGGAGCCAGAAGTCATGA

Upstream 100 bases:

>100_bases
GTCGGCGAACTCGCCCGCGCCGACCTTTCCGAAGAGAACATCGTCCGAATGGGGATGCACGATGAGTGACCTTGCCCTCG
CCCCCACCCGTGCGCGCCGG

Downstream 100 bases:

>100_bases
GCCTCGCCAGCGACGTTCCGGCGGGCTCGCCCCGCCTCCATCTGTCCAAGGATGTCCAGCAGATCGTCTATCGGCTGCTC
GCCGCCGGCCTGATCTGCCT

Product: sugar ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MPAVPGVAVALVGLAVLFAIASPGFLSPGNLSNILVQSVILLLLALPMTLIIMTEGLDLSMGAVLTLASLVLALIVVATQ
SLVLGLLGAIAVGLVFGLANGWLVAVLGIPPFVATLGTLGAAQGLALIVSDGQSVVGIPRFVRQVYSGEMAGIPTPILIG
AGFYALFHVLLYHTRFGTYVCALGGNRDALTLAGVRWRPLLIAVYMLGGATAGVAALLMTARMNAGHPTAAIGMEFDAIA
AVALGGTSFEKGNGWIFGTLLGVLTVGVLRNGLNLMAVPSSVQVACIGALVIFALFLDGMRSQKS

Sequences:

>Translated_305_residues
MPAVPGVAVALVGLAVLFAIASPGFLSPGNLSNILVQSVILLLLALPMTLIIMTEGLDLSMGAVLTLASLVLALIVVATQ
SLVLGLLGAIAVGLVFGLANGWLVAVLGIPPFVATLGTLGAAQGLALIVSDGQSVVGIPRFVRQVYSGEMAGIPTPILIG
AGFYALFHVLLYHTRFGTYVCALGGNRDALTLAGVRWRPLLIAVYMLGGATAGVAALLMTARMNAGHPTAAIGMEFDAIA
AVALGGTSFEKGNGWIFGTLLGVLTVGVLRNGLNLMAVPSSVQVACIGALVIFALFLDGMRSQKS
>Mature_304_residues
PAVPGVAVALVGLAVLFAIASPGFLSPGNLSNILVQSVILLLLALPMTLIIMTEGLDLSMGAVLTLASLVLALIVVATQS
LVLGLLGAIAVGLVFGLANGWLVAVLGIPPFVATLGTLGAAQGLALIVSDGQSVVGIPRFVRQVYSGEMAGIPTPILIGA
GFYALFHVLLYHTRFGTYVCALGGNRDALTLAGVRWRPLLIAVYMLGGATAGVAALLMTARMNAGHPTAAIGMEFDAIAA
VALGGTSFEKGNGWIFGTLLGVLTVGVLRNGLNLMAVPSSVQVACIGALVIFALFLDGMRSQKS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=37.8737541528239, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1790524, Length=291, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788896, Length=300, Percent_Identity=34.6666666666667, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI145693152, Length=297, Percent_Identity=31.3131313131313, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082395, Length=271, Percent_Identity=31.3653136531365, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693214, Length=252, Percent_Identity=34.9206349206349, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789992, Length=359, Percent_Identity=27.2980501392758, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787793, Length=296, Percent_Identity=30.4054054054054, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787794, Length=256, Percent_Identity=29.6875, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=319, Percent_Identity=32.2884012539185, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 31002; Mature: 30871

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAVPGVAVALVGLAVLFAIASPGFLSPGNLSNILVQSVILLLLALPMTLIIMTEGLDLS
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
MGAVLTLASLVLALIVVATQSLVLGLLGAIAVGLVFGLANGWLVAVLGIPPFVATLGTLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
AAQGLALIVSDGQSVVGIPRFVRQVYSGEMAGIPTPILIGAGFYALFHVLLYHTRFGTYV
HHCCEEEEEECCCCEECHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHEE
CALGGNRDALTLAGVRWRPLLIAVYMLGGATAGVAALLMTARMNAGHPTAAIGMEFDAIA
EEECCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHH
AVALGGTSFEKGNGWIFGTLLGVLTVGVLRNGLNLMAVPSSVQVACIGALVIFALFLDGM
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
RSQKS
HCCCC
>Mature Secondary Structure 
PAVPGVAVALVGLAVLFAIASPGFLSPGNLSNILVQSVILLLLALPMTLIIMTEGLDLS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
MGAVLTLASLVLALIVVATQSLVLGLLGAIAVGLVFGLANGWLVAVLGIPPFVATLGTLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
AAQGLALIVSDGQSVVGIPRFVRQVYSGEMAGIPTPILIGAGFYALFHVLLYHTRFGTYV
HHCCEEEEEECCCCEECHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHEE
CALGGNRDALTLAGVRWRPLLIAVYMLGGATAGVAALLMTARMNAGHPTAAIGMEFDAIA
EEECCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHH
AVALGGTSFEKGNGWIFGTLLGVLTVGVLRNGLNLMAVPSSVQVACIGALVIFALFLDGM
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
RSQKS
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]